Browse Element(s) Details


Os.46256.1.S1_at

Description gb:AK109184.1
DB_XREF= gi:32994393
TID=Os.46256.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative small ribonucleoprotein (OSJNBb0049A16.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A07, full insert sequence.
FL= gb:AK109184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3466010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46256.1.S1_at--1039--3531NONE
CATCCTGATTCTGCTGACTGCAAGA
NONE
Os.46256.1.S1_at--981--8011Chr10:18142952..18142976 (25 bp)
GGAGTCATAGTCCAGTTGAGCACTT
LOC_Os10g34660
Os.46256.1.S1_at--781--5271Chr10:18143037..18143061 (25 bp)
GAATGACTCTAGTAATGCCAGATCA
LOC_Os10g34660
Os.46256.1.S1_at--367--3491Chr10:18143082..18143106 (25 bp)
CAGGCATTCTGATAGGCATTCTTCT
LOC_Os10g34660
Os.46256.1.S1_at--432--4951Chr10:18143097..18143121 (25 bp)
GCATTCTTCTGGAGCACCACGTGAT
LOC_Os10g34660
Os.46256.1.S1_at--428--1511Chr10:18143109..18143133 (25 bp)
AGCACCACGTGATTCCAGGAGGCAT
LOC_Os10g34660
Os.46256.1.S1_at--873--7551Chr10:18143181..18143205 (25 bp)
GGGCCATAGAATCTCTCGGTCAGAA
LOC_Os10g34660
Os.46256.1.S1_at--820--5431Chr10:18143203..18143227 (25 bp)
GAACGGGAATCAAGGTCTGACACTT
LOC_Os10g34660
Os.46256.1.S1_at--1034--7791Chr10:18143216..18143240 (25 bp)
GGTCTGACACTTATTATGATCGTAC
LOC_Os10g34660
Os.46256.1.S1_at--388--8511Chr10:18143250..18143274 (25 bp)
TGGCACATCTGATAGATCACGCGGT
LOC_Os10g34660
Os.46256.1.S1_at--122--5871Chr10:18143338..18143362 (25 bp)
GAGCCATCACGTGAATATCCTAGAT
LOC_Os10g34660
Target Sequence 
CATCCTGATTCTGCTGACTGCAAGATGAACTCTAAGCGTAGGAGGAGTCATAGTCCAGTTGAGCACTTGGAAGGCAACAA
TAAGGAGATTGAGATTTCTGGAAGGAAAGATGACTTAAGAGATCTAGAGAATGACTCTAGTAATGCCAGATCAGGCAGAG
GTCNTGAATATGTCAGGCATTCTGATAGGCATTCTTCTGGAGCACCACGTGATTCCAGGAGGCATGATGATTATAGGAGG
TATCATGATAAGCGTGGTGATGACAATGACAGGGGCCATAGAATCTCTCGGTCAGAACGGGAATCAAGGTCTGACACTTA
TTATGATCGTACAAAGCGTGATGGCACATCTGATAGATCACGCGGTGATTGGCGAAATGATGACAAATCTTTAAGGAGAG
AACACAGGAGTAAGAACCAAGATAAGCAAGAGCCATCACGTGAATATCCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis