Browse Element(s) Details


Os.53889.1.S1_at

Description gb:AK100635.1
DB_XREF= gi:32985844
TID=Os.53889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110C18, full insert sequence.
FL= gb:AK100635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3468011/11Vps52/Sac2 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA
LOC_Os10g34694OsAffx.8001.1.S1_at1/1110+18169990..18170937hypothetical protein
LOC_Os10g34700Os.46840.1.S1_x_at11/1110+18175013..18176806expressed protein
LOC_Os10g34700Os.46840.1.S1_at11/1110+18175013..18176806expressed protein
LOC_Os10g34702NANA10+18179086..18180586hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005794cellular_componentGolgi apparatus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53889.1.S1_at--993--5411Chr10:18166511..18166622 (25 bp)
GAAGCCGTGTCTCTGAAGACCTTAT
LOC_Os10g34680
Os.53889.1.S1_at--1020--3231Chr10:18166640..18166664 (25 bp)
CAAGCATTGCCGATGTTGAGCCAAT
LOC_Os10g34680
Os.53889.1.S1_at--614--5471Chr10:18166671..18166695 (25 bp)
GAACTTCGCCGTGACATGGAAAACT
LOC_Os10g34680
Os.53889.1.S1_at--1102--1971Chr10:18166693..18166717 (25 bp)
ACTGCTCTAGAGCTCATGCACAATG
LOC_Os10g34680
Os.53889.1.S1_at--1065--7031Chr10:18166736..18166760 (25 bp)
GTAACCTTTTAGCTGGGATGGAGAT
LOC_Os10g34680
Os.53889.1.S1_at--903--5171Chr10:18166771..18166795 (25 bp)
GCAATGGTTCAGCTACTCAATGACT
LOC_Os10g34680
Os.53889.1.S1_at--703--8211Chr10:18166850..18166874 (25 bp)
GGAATCTGGTTTCTATTACATCCAT
LOC_Os10g34680
Os.53889.1.S1_at--91--2491Chr10:18166957..18166981 (25 bp)
AACAGCGCTGATAGTTTCGATCCCT
LOC_Os10g34680
Os.53889.1.S1_at--299--10631Chr10:18166972..18166996 (25 bp)
TTCGATCCCTATCTTCACAAGCAAG
LOC_Os10g34680
Os.53889.1.S1_at--1025--10351Chr10:18167045..18167069 (25 bp)
TTTTATGGATTGTACCTTCACGGCT
LOC_Os10g34680
Os.53889.1.S1_at--171--5631Chr10:18167100..18167124 (25 bp)
GACAACAATGATCTGCTTGCAGTTT
LOC_Os10g34680
Target Sequence 
GAAGCCGTGTCTCTGAAGACCTTATTCTTTATACTGAATGCCCAAGCATTGCCGATGTTGAGCCAATTGTGAAGAACTTC
GCCGTGACATGGAAAACTGCTCTAGAGCTCATGCACAATGAAGTTGTTACTTCTTGCAGTAACCTTTTAGCTGGGATGGA
GATTCTAAAAGCAGCAATGGTTCAGCTACTCAATGACTACAACAGACTCTCAGAATGTGTGAAGATAATCCCAGGAGGAT
CAACTCTGAACAGGAATCTGGTTTCTATTACATCCATTTCATATGAGATGAGGAAATATTCAATAACACTCTAGTAATTG
TTATGATGTCCAAGCAATTTTTGGAACAGATGAAAAACAAACAGCGCTGATAGTTTCGATCCCTATCTTCACAAGCAAGA
GAAAAGCGCAACACAAAATTATATAATTTTGAACATTCTGTGCTTTGTTTTATGGATTGTACCTTCACGGCTTCACTGAA
ATTTTCTGATCAAATAATACTTGACAACAATGATCTGCTTGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis