Browse Element(s) Details


OsAffx.8001.1.S1_at

Description tigr:9638.m03058
TID=OsAffx.8001.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3469010/11
LOC_Os10g346941/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA
LOC_Os10g34694OsAffx.8001.1.S1_at1/1110+18169990..18170937hypothetical protein
LOC_Os10g34700Os.46840.1.S1_x_at11/1110+18175013..18176806expressed protein
LOC_Os10g34700Os.46840.1.S1_at11/1110+18175013..18176806expressed protein
LOC_Os10g34702NANA10+18179086..18180586hypothetical protein
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8001.1.S1_at--1082--7271Chr10:18169251..18169275 (25 bp)
GTGCCAATGGCTTATCAGGTATCAA
LOC_Os10g34690
OsAffx.8001.1.S1_at--1138--8291Chr10:18169243..18169267 (25 bp)
GGCTTATCAGGTATCAACGAGCTAA
LOC_Os10g34690
OsAffx.8001.1.S1_at--965--6892Chr10:18169233..18169257 (25 bp)
GTATCAACGAGCTAACGGCTACCAT
LOC_Os10g34690
OsAffx.8001.1.S1_at--509--5911Chr10:18169225..18169249 (25 bp)
GAGCTAACGGCTACCATGCCACCAT
LOC_Os10g34690
OsAffx.8001.1.S1_at--393--591Chr10:18169210..18169234 (25 bp)
ATGCCACCATCTATCTATCCATCAT
LOC_Os10g34690
OsAffx.8001.1.S1_at--332--451Chr10:18169206..18169226 (21 bp)
ATCTATCTATCCATCATCCTGTGCT
LOC_Os10g34690
OsAffx.8001.1.S1_at--136--411NONE
ATCATCCTGTGCTGTCCAACTTTTG
NONE
OsAffx.8001.1.S1_at--313--7311Chr10:18168260..18168284 (25 bp)
GTGCTGTCCAACTTTTGATCCAGAG
LOC_Os10g34690
OsAffx.8001.1.S1_at--1153--7251Chr10:18168255..18168279 (25 bp)
GTCCAACTTTTGATCCAGAGAAATC
LOC_Os10g34690
OsAffx.8001.1.S1_at--578--5591Chr10:18168236..18168260 (25 bp)
GAAATCTTGGAGGATGCCGCAGGAT
LOC_Os10g34690
OsAffx.8001.1.S1_at--683--6351Chr10:18168224..18168248 (25 bp)
GATGCCGCAGGATAATTGGATAAGA
LOC_Os10g34690
Target Sequence 
GTGCCAATGGCTTATCAGGTATCAACGAGCTAACGGCTACCATGCCACCATCTATCTATCCATCATCCTGTGCTGTCCAA
CTTTTGATCCAGAGAAATCTTGGAGGATGCCGCAGGATAATTGGATAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis