Browse Element(s) Details


Os.46256.1.S2_at

Description gb:BQ906876
DB_XREF= gi:22305654
DB_XREF=M020h06
CLONE=M020h06
TID=Os.46256.1
CNT=8
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.46256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative small ribonucleoprotein (OSJNBb0049A16.15), mRNA
FL= gb:AK109184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3466010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46256.1.S2_at--1011--6071Chr10:18144207..18144349 (25 bp)
GAGTAATCCTCCAGAGTCAAGCGCT
LOC_Os10g34660
Os.46256.1.S2_at--864--1951Chr10:18144351..18144375 (25 bp)
ACTGGGACTCGAATCTGTTTCCTGA
LOC_Os10g34660
Os.46256.1.S2_at--707--5391NONE
GAAGCATTACATTGCAGGCCTGCGC
NONE
Os.46256.1.S2_at--407--8091Chr10:18144709..18144733 (25 bp)
GGACCGTCGGTCTTGGCCTGTAGAA
LOC_Os10g34660
Os.46256.1.S2_at--514--5271Chr10:18144731..18144755 (25 bp)
GAATGCCCTGCTTACAGCATTGGAG
LOC_Os10g34660
Os.46256.1.S2_at--275--2031Chr10:18144757..18144781 (25 bp)
ACTACTCTGGAGCTCGTTTTGTGCA
LOC_Os10g34660
Os.46256.1.S2_at--199--2071Chr10:18144783..18144807 (25 bp)
ACATTGCTGGCATGTTTGGTACCCT
LOC_Os10g34660
Os.46256.1.S2_at--375--8591Chr10:18144799..18144823 (25 bp)
TGGTACCCTTGCGTGTGAATGTTCA
LOC_Os10g34660
Os.46256.1.S2_at--1089--5271Chr10:18144815..18144839 (25 bp)
GAATGTTCACCTGGGTTTTCACCTG
LOC_Os10g34660
Os.46256.1.S2_at--765--3791Chr10:18144851..18144875 (25 bp)
CTGGGTTGTTTTGTAGTAGCGCCTA
LOC_Os10g34660
Os.46256.1.S2_at--523--4451Chr10:18144871..18144895 (25 bp)
GCCTAAACTGCTGTTCCTGTATGAT
LOC_Os10g34660
Target Sequence 
GAGTAATCCTCCAGAGTCAAGCGCTCACTGGGACTCGAATCTGTTTCCTGACCNGGGAGCGCCAAGAGAAATTCAACAAA
CTCATGGGAGTGAAGAGCAGCAGCAGCAGCTCAGCCCAGGAGAGCAAGGTCGACGGCANAGGACGGGAGCTCGTCGGATG
CCAAGAAGNCAGGAGGAGCTGGACACCGNACCTGGAGAAGCATTACATTGCAGGCCTGCGCCGGAGAGACGGCCGGACCG
TCGGTCTTGGCCTGTAGAATGCCCTGCTTACAGCATTGGAGAACTACTCTGGAGCTCGTTTTGTGCAGACATTGCTGGCA
TGTTTGGTACCCTTGCGTGTGAATGTTCACCTGGGTTTTCACCTGTGAAAGTGCAACTGGGTTGTTTTGTAGTAGCGCCT
AAACTGCTGTTCCTGTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46256.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis