Browse Element(s) Details


Os.46831.3.S1_x_at

Description gb:NM_197095.1
DB_XREF= gi:37535549
TID=Os.46831.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0049A16.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0049A16.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3460211/11csAtPR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46831.3.S1_x_at--513--111Chr10:18119329..18119353 (25 bp)
ATTTACTGTTGACAGGTCCTACCCG
LOC_Os10g34602
Os.46831.3.S1_x_at--546--3891Chr10:18119374..18119398 (25 bp)
CTGTGGACTTTGAGGTTGCGCTGAA
LOC_Os10g34602
Os.46831.3.S1_x_at--866--1251Chr10:18119429..18119453 (25 bp)
AGATTTAAGCTTTCTTGCCGTGCAG
LOC_Os10g34602
Os.46831.3.S1_x_at--961--1571Chr10:18119452..18119476 (25 bp)
AGCTCACTCGTATCTCTAACATTAG
LOC_Os10g34602
Os.46831.3.S1_x_at--1134--2171Chr10:18119520..18119544 (25 bp)
ACACTGGAGCTGACATTTGGCTACA
LOC_Os10g34602
Os.46831.3.S1_x_at--321--10871Chr10:18119536..18119560 (25 bp)
TTGGCTACATTGTACGCTCCGTGGA
LOC_Os10g34602
Os.46831.3.S1_x_at--255--8391Chr10:18119561..18119585 (25 bp)
GGCGACGATCAACGTGCGAGTCATT
LOC_Os10g34602
Os.46831.3.S1_x_at--251--691Chr10:18119603..18119627 (25 bp)
AGAAGGTTTTTCAGCTCGGATTACT
LOC_Os10g34602
Os.46831.3.S1_x_at--1070--6091Chr10:18119656..18119680 (25 bp)
GAGTCTTACTGCTTGATTCTGGAGA
LOC_Os10g34602
Os.46831.3.S1_x_at--105--1311Chr10:18119692..18119716 (25 bp)
AGATGTCTGTCACTGCCGATGGCAT
LOC_Os10g34602
Os.46831.3.S1_x_at--578--3171Chr10:18119761..18119785 (25 bp)
AATTGGAGGTTTCTGTTGCGGCATT
LOC_Os10g34602
Target Sequence 
ATTTACTGTTGACAGGTCCTACCCGGGCGGTTGTGGTGGTTGATCCTGTGGACTTTGAGGTTGCGCTGAAAGTGAAGGGT
TCGATCGAATCCGAGGATAAAGATTTAAGCTTTCTTGCCGTGCAGCTCACTCGTATCTCTAACATTAGTGGAACACACTT
GATTAACAAAGAGTACACAAGCAAGCTTAGCACACTGGAGCTGACATTTGGCTACATTGTACGCTCCGTGGAGGCGACGA
TCAACGTGCGAGTCATTGACGGGTCATGGCCAGAAGAAGGTTTTTCAGCTCGGATTACTGCACATACCTCCAGCCTGAAG
GATTATAGAGTCTTACTGCTTGATTCTGGAGATGAGATGAAGAAGATGTCTGTCACTGCCGATGGCATGATAGAGCTGTC
AAGGCGTGTTGTTTCTGTTGAATTTGAGGGGGAATTGGAGGTTTCTGTTGCGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46831.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis