Browse Element(s) Details


OsAffx.22143.1.S1_at

Description gb:NM_188288.1
DB_XREF= gi:34903659
GEN=B1015E06.15
TID=OsAffx.22143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1015E06.15 (B1015E06.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g104106/11transposon protein, putative, unclassified
LOC_Os01g432102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g215102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g346501/11retrotransposon protein, putative, unclassified
LOC_Os12g363601/11hypothetical protein
LOC_Os02g185901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22143.1.S1_at--560--9273Chr04:29425118..29425255 (25 bp)
TCCTGCCCCTGATCCGGCGGTGATG
NONE
OsAffx.22143.1.S1_at--362--8871NONE
TGATGGCGGTGTTTCTCGTTTACAT
NONE
OsAffx.22143.1.S1_at--881--4671NONE
GCGGTGTTTCTCGTTTACATTGAGA
NONE
OsAffx.22143.1.S1_at--694--6431NONE
GATCATGAAGACAGAGCCGCCAAAG
NONE
OsAffx.22143.1.S1_at--1058--3951Chr01:5483006..5483030 (25 bp)
CGGTCGGACCGAGCCAAAGGCAGTC
LOC_Os01g10410
OsAffx.22143.1.S1_at--618--4371Chr01:5482994..5483018 (25 bp)
GCCAAAGGCAGTCTGACCGAGCCGT
LOC_Os01g10410
OsAffx.22143.1.S1_at--693--58129Chr12:1380995..1381069 (25 bp)
GACCGGCCACTACACTGCGTTTTCT
NONE
OsAffx.22143.1.S1_at--27--98736Chr11:1479703..1479777 (25 bp)
TACACTGCGTTTTCTAGCCGTTACA
NONE
OsAffx.22143.1.S1_at--927--71719Chr09:1843943..1843967 (25 bp)
GTCTGACCGGCCACTCTATGGCGGT
NONE
OsAffx.22143.1.S1_at--480--2012Chr01:35516991..35517015 (25 bp)
ACTCTATGGCGGTCGGACCGGCAGA
NONE
OsAffx.22143.1.S1_at--914--3376Chr07:2573977..2574198 (25 bp)
CAGCCTCCGTCATCTCGTGTTAATA
NONE
Target Sequence 
TCCTGCCCCTGATCCGGCGGTGATGGCGGTGTTTCTCGTTTACATTGAGAACATGGAGATCATGAAGACAGAGCCGCCAA
AGCCACAACCGGTCGGACCGAGCCAAAGGCAGTCTGACCGAGCCGTGGAAGGTCTGACCGGCCACTACACTGCGTTTTCT
AGCCGTTACAAAGTAGTCCGGTCTGACCGGCCACTCTATGGCGGTCGGACCGGCAGAGCACAGAGTTGGGGATTTCGACC
CCAACGGCTAGTTTTGGTGGTTGGGGGTATATATACCCACTCCCCAGCAACAAGGGTGTCGGCGGCGTCGGCGGGTGGGT
TCGTGGCCGACGGCGAGGTGGCGAGGAGCAGCGCGCTGCAGCCTCCGTCATCTCGTGTTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis