Browse Element(s) Details


Os.18296.1.S1_x_at

Description gb:C98975
DB_XREF= gi:3761727
DB_XREF=C98975
CLONE=E3467_1Z
TID=Os.18296.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18296 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1044011/11glycosyltransferase family 14 protein, putative, expressed
LOC_Os12g271021/11Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os05g200201/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0006071biological_processglycerol metabolism
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0031225cellular_componentanchored to membrane
GO:0004650molecular_functionpolygalacturonase activity
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18296.1.S1_x_at--137--2491Chr01:5506019..5506043 (25 bp)
AACAGCCAGTGCAAGTAGCTAAGCT
LOC_Os01g10440
Os.18296.1.S1_x_at--543--2151Chr01:5506020..5506044 (25 bp)
ACAGCCAGTGCAAGTAGCTAAGCTA
LOC_Os01g10440
Os.18296.1.S1_x_at--985--4891Chr01:5506045..5506069 (25 bp)
GCTTAGCTTAGCTGCGAGAGTGATC
LOC_Os01g10440
Os.18296.1.S1_x_at--383--3671Chr01:5506051..5506075 (25 bp)
CTTAGCTGCGAGAGTGATCGAGTGA
LOC_Os01g10440
Os.18296.1.S1_x_at--280--7391Chr01:5506072..5506096 (25 bp)
GTGAGATAAATCACTCACTGGTTAA
LOC_Os01g10440
Os.18296.1.S1_x_at--1101--10331Chr01:5506139..5506163 (25 bp)
TTTTTACCCTACTGATTTACTTGCA
LOC_Os01g10440
Os.18296.1.S1_x_at--509--1811Chr01:5506144..5506168 (25 bp)
ACCCTACTGATTTACTTGCAGGTTT
LOC_Os01g10440
Os.18296.1.S1_x_at--420--2051Chr01:5506157..5506181 (25 bp)
ACTTGCAGGTTTGTACAAATTCATC
LOC_Os01g10440
Os.18296.1.S1_x_at--566--9871Chr01:5506248..5506272 (25 bp)
TACTTGCTAGTACTAATTAACTGTA
LOC_Os01g10440
Os.18296.1.S1_x_at--758--4851Chr01:5506253..5506277 (25 bp)
GCTAGTACTAATTAACTGTAATCCA
LOC_Os01g10440
Os.18296.1.S1_x_at--309--1977Chr06:4587751..4587770 (20 bp)
ACTGTAATCCATTTTCATTATCCCA
NONE
Target Sequence 
AACAGCCAGTGCAAGTAGCTAAGCTAGCTTAGCTTAGCTGCGAGAGTGATCGAGTGAGATAAATCACTCACTGGTTAANC
TTAATCTGCATCGTGTAANTCGCTTCTTTTTTCTTCTTTTTTTTTACCCTACTGATTTACTTGCAGGTTTGTACAAATTC
ATCAAGTTAAAACTTNAAAGCATATATATGTATAGAGATAGAGAGAGAAAGAGAGAGATAAGTATATAGTACTTGCTAGT
ACTAATTAACTGTAATCCATTTTCATTATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18296.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis