Browse Element(s) Details


OsAffx.10996.1.A1_at

Description tigr:9629.m00999
TID=OsAffx.10996.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1046011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein
LOC_Os01g10470Os.34717.1.S1_at11/111+5537431..5538322Rapid ALkalinization Factor family protein, expressed
LOC_Os01g10480OsAffx.22139.1.S1_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10480OsAffx.22139.1.S1_x_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10490Os.53609.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10490Os.50846.1.S1_s_at11/111+5546421..5547787expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10996.1.A1_at--13--1551Chr01:5527512..5527536 (25 bp)
AGCATCTTGAGGCTCTTCATGCTGC
LOC_Os01g10460
OsAffx.10996.1.A1_at--348--7291Chr01:5527665..5527689 (25 bp)
GTGCCGGTGAGGATCTGGACCACCT
LOC_Os01g10460
OsAffx.10996.1.A1_at--793--1751Chr01:5527686..5527710 (25 bp)
ACCTGCTTGAACGACGTGGTGTCCG
LOC_Os01g10460
OsAffx.10996.1.A1_at--729--8611Chr01:5527702..5527726 (25 bp)
TGGTGTCCGCCTGCACGAACGTGGT
LOC_Os01g10460
OsAffx.10996.1.A1_at--261--7731Chr01:5527808..5527832 (25 bp)
GGTGGCCATGATAAAAATGTCGCCT
LOC_Os01g10460
OsAffx.10996.1.A1_at--1160--8711Chr01:5527816..5527840 (25 bp)
TGATAAAAATGTCGCCTTTGGCAAG
LOC_Os01g10460
OsAffx.10996.1.A1_at--33--2551Chr01:5528100..5528124 (25 bp)
AACTCAGAAGATCAGTTCTTGTTGT
LOC_Os01g10460
OsAffx.10996.1.A1_at--788--10551Chr01:5528115..5528139 (25 bp)
TTCTTGTTGTGCTGGATGACCAAAC
LOC_Os01g10460
OsAffx.10996.1.A1_at--464--7311Chr01:5528123..5528382 (25 bp)
GTGCTGGATGACCAAACAGTTTTTT
LOC_Os01g10460
OsAffx.10996.1.A1_at--716--10631Chr01:5528400..5528424 (25 bp)
TTCGCAAAATCCCAAAAGATACAGT
LOC_Os01g10460
OsAffx.10996.1.A1_at--422--1271Chr01:5528416..5528440 (25 bp)
AGATACAGTTGTCAGCCAAGCTGGG
LOC_Os01g10460
Target Sequence 
AGCATCTTGAGGCTCTTCATGCTGCTCCGCCGCTCGTACAGCTTGAACGCCGGCTTCTTCGGCCCCGGCGGCGCGGGCGC
GGGCTTCGCCGCCGCCGGGGGCGGCGCGGCGGCGGCTGCGCCGCCCGCCGCGGCGGCGGCCGCGGTCTCCGGGGTGCCGG
TGAGGATCTGGACCACCTGCTTGAACGACGTGGTGTCCGCCTGCACGAACGTGGTCGGGAACGGGTTGGAAGGGTCGCCG
GCGGCCGCCGCCGGCAGCGGCAGCGGCGAGTGCGGCGGCGGCGCGTGGGTGGAGGTGGTGGCCATGATAAAAATGTCGCC
TTTGGCAAGGGAGAGAGAGAGTGAGGGGAGGATAGAGGAGAGAAGAGTGAGGGGGGGTTTTATTGGGCTTTTTGGAAGGA
ACTCAGAAGATCAGTTCTTGTTGTGCTGGATGACCAAACAGTTTTTTCGCAAAATCCCAAAAGATACAGTTGTCAGCCAA
GCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10996.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis