Browse Element(s) Details


Os.50846.1.S1_s_at

Description gb:AK058956.1
DB_XREF= gi:32968974
TID=Os.50846.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B04, full insert sequence.
FL= gb:AK058956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1049011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein
LOC_Os01g10470Os.34717.1.S1_at11/111+5537431..5538322Rapid ALkalinization Factor family protein, expressed
LOC_Os01g10480OsAffx.22139.1.S1_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10480OsAffx.22139.1.S1_x_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10490Os.53609.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10490Os.50846.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.50846.1.S1_s_at--612--4731Chr01:5546477..5546501 (25 bp)
GCTGTTTCAAATTCGATCGGTGGCA
LOC_Os01g10490
Os.50846.1.S1_s_at--1003--3851Chr01:5546476..5546500 (25 bp)
CTGTTTCAAATTCGATCGGTGGCAA
LOC_Os01g10490
Os.50846.1.S1_s_at--816--8771Chr01:5546475..5546499 (25 bp)
TGTTTCAAATTCGATCGGTGGCAAA
LOC_Os01g10490
Os.50846.1.S1_s_at--318--6831Chr01:5546474..5546498 (25 bp)
GTTTCAAATTCGATCGGTGGCAAAT
LOC_Os01g10490
Os.50846.1.S1_s_at--1013--10311Chr01:5546473..5546497 (25 bp)
TTTCAAATTCGATCGGTGGCAAATG
LOC_Os01g10490
Os.50846.1.S1_s_at--351--10511Chr01:5546472..5546496 (25 bp)
TTCAAATTCGATCGGTGGCAAATGA
LOC_Os01g10490
Os.50846.1.S1_s_at--175--3291Chr01:5546470..5546494 (25 bp)
CAAATTCGATCGGTGGCAAATGAAG
LOC_Os01g10490
Os.50846.1.S1_s_at--1080--3091Chr01:5546468..5546492 (25 bp)
AATTCGATCGGTGGCAAATGAAGGA
LOC_Os01g10490
Os.50846.1.S1_s_at--491--9391Chr01:5546465..5546489 (25 bp)
TCGATCGGTGGCAAATGAAGGAAGT
LOC_Os01g10490
Os.50846.1.S1_s_at--364--8231Chr01:5546456..5546480 (25 bp)
GGCAAATGAAGGAAGTGAGCTTATC
LOC_Os01g10490
Os.50846.1.S1_s_at--455--2291Chr01:5546453..5546477 (25 bp)
AAATGAAGGAAGTGAGCTTATCCTT
LOC_Os01g10490
Target Sequence
GCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50846.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis