Browse Element(s) Details


OsAffx.22139.1.S1_at

Description tigr:9629.m01001
TID=OsAffx.22139.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1048011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein
LOC_Os01g10470Os.34717.1.S1_at11/111+5537431..5538322Rapid ALkalinization Factor family protein, expressed
LOC_Os01g10480OsAffx.22139.1.S1_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10480OsAffx.22139.1.S1_x_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10490Os.53609.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10490Os.50846.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22139.1.S1_at--354--9211Chr01:5541154..5541174 (21 bp)
TCCAGGTCAACGACCGCCTCGTGTT
LOC_Os01g10480
OsAffx.22139.1.S1_at--798--7071Chr01:5541013..5541169 (25 bp)
GTCAACGACCGCCTCGTGTTTAGGT
LOC_Os01g10480
OsAffx.22139.1.S1_at--682--3251Chr01:5541011..5541167 (25 bp)
CAACGACCGCCTCGTGTTTAGGTAT
LOC_Os01g10480
OsAffx.22139.1.S1_at--690--5811Chr01:5541007..5541163 (25 bp)
GACCGCCTCGTGTTTAGGTATAACA
LOC_Os01g10480
OsAffx.22139.1.S1_at--88--4211Chr01:5541005..5541161 (25 bp)
CCGCCTCGTGTTTAGGTATAACAAG
LOC_Os01g10480
OsAffx.22139.1.S1_at--728--10071Chr01:5540993..5541017 (25 bp)
TAGGTATAACAAGGAGGACTCGGTG
LOC_Os01g10480
OsAffx.22139.1.S1_at--608--4231Chr01:5540584..5540608 (25 bp)
CCGTCTCCGGCTGGAGGGATGAACT
LOC_Os01g10480
OsAffx.22139.1.S1_at--775--9491Chr01:5540581..5540605 (25 bp)
TCTCCGGCTGGAGGGATGAACTTCA
LOC_Os01g10480
OsAffx.22139.1.S1_at--1131--9271Chr01:5540579..5540603 (25 bp)
TCCGGCTGGAGGGATGAACTTCACG
LOC_Os01g10480
OsAffx.22139.1.S1_at--752--3891Chr01:5540574..5540598 (25 bp)
CTGGAGGGATGAACTTCACGGCGCC
LOC_Os01g10480
OsAffx.22139.1.S1_at--395--1071Chr01:5540570..5540594 (25 bp)
AGGGATGAACTTCACGGCGCCGGCG
LOC_Os01g10480
Target Sequence 
TCCAGGTCAACGACCGCCTCGTGTTTAGGTATAACAAGGAGGACTCGGTGGTGGTGGTGAGCCAGGGCCACTACGACGGC
TGCAACGCCACCGACCCGCTCCTCCGCGACGCCGGCGGCGACTCCACCTTCGTCTTCGACAGCTCCGGCCCCTTCTTCTT
CATCAGCGGCGACCCCGCCCGCTGCCAGGCCGGCGAGCGCCTCATCGTCGTCGTCCTCGCCGTCCGCGGCAACGCAACCG
CCACGCCTACCACCCCCTCGCCGCCGCCGCCGCCAACCGTTCCGGCGGCCCCCACCCCACGCCCGTCTCCGCCGCCGCCG
GCCGCGGGAACGAACGGCACGGCGAGGGCGCCGTCGCCACCCGTTCCAGCACCGGCCCCTGCAGGCTCGCCGCCGCCGCC
GCCACCTCCTCCGGCTGGGGGAAACTTCACGGCGCCGTCTCCGGCTGGAGGGATGAACTTCACGGCGCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis