Browse Element(s) Details


Os.320.2.S1_a_at

Description gb:AY553724.1
DB_XREF= gi:45387426
TID=Os.320.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.320 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-like protein RMADS222 mRNA, complete cds.
PROD=MADS-like protein RMADS222
FL= gb:AY553724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1050411/11Floral homeotic protein AGAMOUS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10470Os.34717.1.S1_at11/111+5537431..5538322Rapid ALkalinization Factor family protein, expressed
LOC_Os01g10480OsAffx.22139.1.S1_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10480OsAffx.22139.1.S1_x_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10490Os.53609.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10490Os.50846.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g10520OsAffx.22137.1.S1_at11/111+5575556..5582069expressed protein
LOC_Os01g10520OsAffx.22137.1.S1_x_at10/111+5575556..5582069expressed protein
LOC_Os01g10520Os.23504.1.A1_at6/111+5575556..5582069expressed protein
LOC_Os01g10530OsAffx.23187.1.S1_at11/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_s_at10/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.1288.1.S1_at4/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_at1/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10540OsAffx.22137.1.S1_at11/111+5590591..5595948expressed protein
LOC_Os01g10540OsAffx.22137.1.S1_x_at11/111+5590591..5595948expressed protein
LOC_Os01g10540Os.1288.1.S1_at3/111+5590591..5595948expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010047biological_processfruit dehiscence
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0048497biological_processmaintenance of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.320.2.S1_a_at--551--7931Chr01:5558133..5558157 (25 bp)
GGATTCTATCAACACCATGAGCCTC
LOC_Os01g10504
Os.320.2.S1_a_at--463--8911Chr01:5558116..5558140 (25 bp)
TGAGCCTCAGGGACCTTAAACAGGT
LOC_Os01g10504
Os.320.2.S1_a_at--200--2491Chr01:5558087..5558111 (25 bp)
AACAGGCTGGAGAAAGGCATAGCTA
LOC_Os01g10504
Os.320.2.S1_a_at--955--671Chr01:5557679..5557703 (25 bp)
ATGACAACATGTACCTGAGGAGCAA
LOC_Os01g10504
Os.320.2.S1_a_at--233--7631Chr01:5557525..5557549 (25 bp)
GGGACAGCAGCCACTGAACATGATG
LOC_Os01g10504
Os.320.2.S1_a_at--250--7591Chr01:5557499..5557523 (25 bp)
GGGCAGCATCAACAAGTGAATACGA
LOC_Os01g10504
Os.320.2.S1_a_at--877--7871Chr01:5557468..5557492 (25 bp)
GGTTAATAACCCATATGATTCCAGG
LOC_Os01g10504
Os.320.2.S1_a_at--290--6591Chr01:5557452..5557476 (25 bp)
GATTCCAGGAACTTTCTTCAAGTGA
LOC_Os01g10504
Os.320.2.S1_a_at--50--3231Chr01:5557434..5557458 (25 bp)
CAAGTGAACATCATGCAGCAGCCTC
LOC_Os01g10504
Os.320.2.S1_a_at--801--5051Chr01:5557210..5557234 (25 bp)
GCAGCCGGCCTTCAATTAGTTTTGG
LOC_Os01g10504
Os.320.2.S1_a_at--853--8751Chr01:5557185..5557209 (25 bp)
TGTAGACACCGTACGTACACACGTA
LOC_Os01g10504
Target Sequence 
GGATTCTATCAACACCATGAGCCTCAGGGACCTTAAACAGGTAGAGAACAGGCTGGAGAAAGGCATAGCTAAGATAAGGG
CTAGAAAGAATGAGCTGTTATATGCTGAAGTTGAGTACATGCAGAAAAGGGAAGTTGAGCTGCAGAATGACAACATGTAC
CTGAGGAGCAAGGTTGTTGAGAATGAGAGGGGACAGCAGCCACTGAACATGATGGGGGCAGCATCAACAAGTGAATACGA
TCATATGGTTAATAACCCATATGATTCCAGGAACTTTCTTCAAGTGAACATCATGCAGCAGCCTCAGCATTACGCCCATC
AGCTGCAGCCAACTACCCTTCAACTCGGCAGCCGGCCTTCAATTAGTTTTGGTGTAGACACCGTACGTACACACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.320.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis