Browse Element(s) Details


Os.34717.1.S1_at

Description gb:AK070397.1
DB_XREF= gi:32980421
TID=Os.34717.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.23 (B1015E06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049L07, full insert sequence.
FL= gb:AK070397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1047011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein
LOC_Os01g10470Os.34717.1.S1_at11/111+5537431..5538322Rapid ALkalinization Factor family protein, expressed
LOC_Os01g10480OsAffx.22139.1.S1_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10480OsAffx.22139.1.S1_x_at11/111+5540450..5541346Plastocyanin-like domain containing protein
LOC_Os01g10490Os.53609.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10490Os.50846.1.S1_s_at11/111+5546421..5547787expressed protein
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34717.1.S1_at--836--9151Chr01:5537759..5537783 (25 bp)
TGCGCTCGCAATACCAACTGATCAT
LOC_Os01g10470
Os.34717.1.S1_at--148--8491Chr01:5537677..5537701 (25 bp)
TGGCGGCGAATACGCTGCTGTCATA
LOC_Os01g10470
Os.34717.1.S1_at--781--1831Chr01:5537666..5537690 (25 bp)
ACGCTGCTGTCATAAGTGTATGTAC
LOC_Os01g10470
Os.34717.1.S1_at--768--7431Chr01:5537651..5537675 (25 bp)
GTGTATGTACATATCGACTCAATCC
LOC_Os01g10470
Os.34717.1.S1_at--1027--10131Chr01:5537640..5537664 (25 bp)
TATCGACTCAATCCAAAGCGTATGT
LOC_Os01g10470
Os.34717.1.S1_at--477--3291Chr01:5537627..5537651 (25 bp)
CAAAGCGTATGTGATGAGCAACTGC
LOC_Os01g10470
Os.34717.1.S1_at--1082--331Chr01:5537563..5537587 (25 bp)
ATACAAGTGGTAGCATGCATTCTAT
LOC_Os01g10470
Os.34717.1.S1_at--522--4991Chr01:5537551..5537575 (25 bp)
GCATGCATTCTATTATTTGTCATCA
LOC_Os01g10470
Os.34717.1.S1_at--245--7131Chr01:5537533..5537557 (25 bp)
GTCATCATCGAATTAATTGCGTTTT
LOC_Os01g10470
Os.34717.1.S1_at--814--7951Chr01:5537467..5537491 (25 bp)
GGATCAGTTCATGCATGTTTCTCGG
LOC_Os01g10470
Os.34717.1.S1_at--788--3511Chr01:5537454..5537478 (25 bp)
CATGTTTCTCGGTTGCACTATTGAA
LOC_Os01g10470
Target Sequence 
TGCGCTCGCAATACCAACTGATCATCTCCTCTTCCTCCGCCGTCGCCGCCGTCGTCGCCATCGCCGCCGGCGGCGGCGGC
GGTGGCGGCGAATACGCTGCTGTCATAAGTGTATGTACATATCGACTCAATCCAAAGCGTATGTGATGAGCAACTGCTGC
TGCTGCTGCTAAAAAATCTTCAGTGCTAAAATATCTATACAAGTGGTAGCATGCATTCTATTATTTGTCATCATCGAATT
AATTGCGTTTTCAAATGTTGGGGAAATTTTTTTTTTGAAGAGAATGTACTGAGGATCAGTTCATGCATGTTTCTCGGTTG
CACTATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis