Browse Element(s) Details


Os.1288.1.S1_at

Description gb:AK106359.1
DB_XREF= gi:32991568
TID=Os.1288.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.10 (P0489A05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A10, full insert sequence.
FL= gb:AK106359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g106004/11Aquaporin NIP1.2, putative, expressed
LOC_Os01g105304/11Major intrinsic protein, expressed
LOC_Os01g105403/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10580Os.15198.1.S1_at11/111+5636571..5638292B-box zinc finger family protein, expressed
LOC_Os01g10590OsAffx.23189.1.S1_s_at11/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.2.S1_at10/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.1.S1_at6/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1288.1.S1_at--1125--3751Chr01:5591167..5591191 (25 bp)
CTCTTGTGTTTCTTTCGGAAGTAAG
LOC_Os01g10540
Os.1288.1.S1_at--147--7071Chr01:5591147..5591171 (25 bp)
GTAAGAGTGGAAATGCTTCAGCAAC
LOC_Os01g10540
Os.1288.1.S1_at--227--5351Chr01:5590615..5590637 (23 bp)
GAAGATGGGTTTCGTCTTTGCGCAC
LOC_Os01g10540
Os.1288.1.S1_at--998--9171Chr01:5590587..5590611 (25 bp)
TGCCTGCATCAACACTCATGTAGAG
NONE
Os.1288.1.S1_at--199--4712Chr01:5590491..5590515 (25 bp)
GCTGGCCTGGACTAGTCTTTCACTA
NONE
Os.1288.1.S1_at--850--9551Chr01:5590476..5590500 (25 bp)
TCTTTCACTATCTTTGTACTCCCAA
NONE
Os.1288.1.S1_at--261--7011Chr01:5590461..5590485 (25 bp)
GTACTCCCAATTCTCAAACAGATAG
NONE
Os.1288.1.S1_at--518--7312Chr01:5660682..5660706 (25 bp)
GTGCTCTTCGCAGGGTATGTGTTGA
LOC_Os01g10600
Os.1288.1.S1_at--547--9812Chr01:5660634..5660658 (25 bp)
TAACTACGTGCTGTTGATGCCGCAT
LOC_Os01g10600
Os.1288.1.S1_at--343--6352Chr01:5660619..5660643 (25 bp)
GATGCCGCATTAGTAGTAGTTGTTC
LOC_Os01g10600
Os.1288.1.S1_at--413--4895Chr05:26069423..26069575 (25 bp)
GCTTATACTTATCAGCCACAGTTTG
NONE
Target Sequence 
CTCTTGTGTTTCTTTCGGAAGTAAGAGTGGAAATGCTTCAGCAACTCGCAACATGGGAGCTGGGCTGTACAAGTTATAGT
CCAAATAATGCTTAAACTTGGACATGTTTTTCCTGAGCTGTTGAGGAGGAGTAAGCTGTAGGTTGAAGATGGGTTTCGTC
TTTGCGCACGGCTGCCTGCATCAACACTCATGTAGAGTAGGTGGTCAATCCAAGAAGATGATGCTGCTGCTGCTGCATAG
TGCTATAAAAATACCAGCACATAATGCTGCTGGCCTGGACTAGTCTTTCACTATCTTTGTACTCCCAATTCTCAAACAGA
TAGCTTTGCAATTGAGTCAGGGAGAGAGATGGCTGGGAGAGAGGATGGAGCAGCAGCAGGAGCCATGGAAGAAGGGCAAG
ACAGCAAGGAGGTGAACGTGCTCTTCGCAGGGTATGTGTTGAAGTAAATCATAAAATTTCACAGTTAACTACGTGCTGTT
GATGCCGCATTAGTAGTAGTTGTTCGGTATTCTTTTTCGTTTATGCTTATACTTATCAGCCACAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis