Browse Element(s) Details


Os.1302.1.S1_at

Description gb:AK067471.1
DB_XREF= gi:32977489
TID=Os.1302.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.26 (P0489A05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107L10, full insert sequence.
FL= gb:AK067471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1061011/11BES1/BZR1 homolog protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10590OsAffx.23189.1.S1_s_at11/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.2.S1_at10/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.1.S1_at6/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1302.1.S1_at--1053--7731Chr01:5666327..5666351 (25 bp)
GGTGGGCAACAATTCATCGAGGATG
LOC_Os01g10610
Os.1302.1.S1_at--980--771Chr01:5666305..5666329 (25 bp)
ATGTGCACGCCAGGGCAAAGCGGCA
LOC_Os01g10610
Os.1302.1.S1_at--1003--9091Chr01:5666270..5666294 (25 bp)
TGCGATTCCTGGCATGGCACCACAC
LOC_Os01g10610
Os.1302.1.S1_at--64--5091Chr01:5666254..5666278 (25 bp)
GCACCACACCCAGATATTCATATGA
LOC_Os01g10610
Os.1302.1.S1_at--202--8871Chr01:5666232..5666256 (25 bp)
TGATGGATGCGGTTTCTGATGAGTT
LOC_Os01g10610
Os.1302.1.S1_at--224--5391Chr01:5666199..5666223 (25 bp)
GAAGCAGCACAAACGGTGGCCATCA
LOC_Os01g10610
Os.1302.1.S1_at--1041--1851Chr01:5666133..5666157 (25 bp)
ACGAGGACTCGGGATCGGACGACCT
LOC_Os01g10610
Os.1302.1.S1_at--205--6411Chr01:5666121..5666145 (25 bp)
GATCGGACGACCTAGAGCTGACTCT
LOC_Os01g10610
Os.1302.1.S1_at--877--1371Chr01:5665989..5666013 (25 bp)
AGACCAATCGTGTGGTTCCTTCAGA
LOC_Os01g10610
Os.1302.1.S1_at--921--3151Chr01:5665898..5665922 (25 bp)
AATTCGGCCAAACCCAGCTGTGATA
LOC_Os01g10610
Os.1302.1.S1_at--537--3891Chr01:5665881..5665905 (25 bp)
CTGTGATATGGTAATCTCAGCTGGC
LOC_Os01g10610
Target Sequence 
GGTGGGCAACAATTCATCGAGGATGTGCACGCCAGGGCAAAGCGGCACATGCTCCCCTGCGATTCCTGGCATGGCACCAC
ACCCAGATATTCATATGATGGATGCGGTTTCTGATGAGTTTGCATTTGGAAGCAGCACAAACGGTGGCCATCAGGCGGCT
GGTCTGGTGAGGGCGTGGGAAGGCGAGAGGATCCACGAGGACTCGGGATCGGACGACCTAGAGCTGACTCTTGGAAGCTC
TAGGACAAGAGCTGCTGCTTAACAAAAAAAAAAAAANCTAACCTGGAGGCATTCTTGTCTGTAGCTTATTTGTTCGTGTT
CATTAGTTTCTGAAAGAGAGACCAATCGTGTGGTTCCTTCAGATAGCTTCAGTTGTGATGATAATTGTGTTATTTATGTG
AGACACGAGCTAGAGAGAAAGGGGGCTTTAATTCGGCCAAACCCAGCTGTGATATGGTAATCTCAGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis