Browse Element(s) Details


OsAffx.1979.1.S1_x_at

Description tigr:9629.m01019
TID=OsAffx.1979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1065011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1979.1.S1_x_at--574--1531Chr01:5686741..5686765 (25 bp)
AGCAGGAGAGGCGATGGCCTCACCA
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--1--1331Chr01:5686747..5686771 (25 bp)
AGAGGCGATGGCCTCACCACAGCGA
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--121--911Chr01:5686749..5686773 (25 bp)
AGGCGATGGCCTCACCACAGCGAGT
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--68--8471Chr01:5686755..5686779 (25 bp)
TGGCCTCACCACAGCGAGTAGTGAC
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--693--9671Chr01:5686760..5686784 (25 bp)
TCACCACAGCGAGTAGTGACCTCGG
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--238--3371Chr01:5686761..5686785 (25 bp)
CACCACAGCGAGTAGTGACCTCGGC
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--177--1711Chr01:5686762..5686786 (25 bp)
ACCACAGCGAGTAGTGACCTCGGCC
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--528--3391Chr01:5686766..5686790 (25 bp)
CAGCGAGTAGTGACCTCGGCCTCGT
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--197--1051Chr01:5686804..5686828 (25 bp)
AGGTGATGGCGTCGGTACAGGTGGC
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--685--7011Chr01:5686818..5686842 (25 bp)
GTACAGGTGGCGATGACCCCGATGT
LOC_Os01g10650
OsAffx.1979.1.S1_x_at--770--3471Chr01:5686821..5686845 (25 bp)
CAGGTGGCGATGACCCCGATGTGCA
LOC_Os01g10650
Target Sequence 
AGCAGGAGAGGCGATGGCCTCACCACAGCGAGTAGTGACCTCGGCCTCGTCGGGCGGCGGGAGAGGTGATGGCGTCGGTA
CAGGTGGCGATGACCCCGATGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1979.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis