Browse Element(s) Details


Os.33166.1.S1_at

Description gb:AK100265.1
DB_XREF= gi:32985474
TID=Os.33166.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.33166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064J20, full insert sequence.
FL= gb:AK101527.1 gb:AK100265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1068011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33166.1.S1_at--894--8731Chr01:5697026..5697050 (25 bp)
TGTCACTGGTGCACGCGAGGATGGA
LOC_Os01g10680
Os.33166.1.S1_at--59--9071Chr01:5696888..5696912 (25 bp)
TGCATTGCCTCTTCTACGCGTTCGA
LOC_Os01g10680
Os.33166.1.S1_at--813--7291Chr01:5696816..5696840 (25 bp)
GTGCGCGCTTCTCCGAAGTGTACAT
LOC_Os01g10680
Os.33166.1.S1_at--73--4231Chr01:5696804..5696828 (25 bp)
CCGAAGTGTACATGGAGAGTGTCAG
LOC_Os01g10680
Os.33166.1.S1_at--743--10031Chr01:5696704..5696728 (25 bp)
TAGAGTTGGCCGGACAATGATCCAA
LOC_Os01g10680
Os.33166.1.S1_at--84--5611Chr01:5696692..5696716 (25 bp)
GACAATGATCCAATGCCGGGTCTAC
LOC_Os01g10680
Os.33166.1.S1_at--367--3031Chr01:5696681..5696705 (25 bp)
AATGCCGGGTCTACCTGTCGCGGCC
LOC_Os01g10680
Os.33166.1.S1_at--233--7371Chr01:5696634..5696658 (25 bp)
GTGACAAAGCCGTCTTGTTTCAGGT
LOC_Os01g10680
Os.33166.1.S1_at--908--2351Chr01:5696629..5696653 (25 bp)
AAAGCCGTCTTGTTTCAGGTGTCCG
LOC_Os01g10680
Os.33166.1.S1_at--871--3591Chr01:5696621..5696645 (25 bp)
CTTGTTTCAGGTGTCCGGCGGATGA
LOC_Os01g10680
Os.33166.1.S1_at--511--711Chr01:5696512..5696536 (25 bp)
ATGATGATCAGTGGGTGGTTATGTA
LOC_Os01g10680
Target Sequence 
TGTCACTGGTGCACGCGAGGATGGAGACGGCCTTCTTCGGGAGGCTGGAGCAGCGCGGCATCGTGAGCGCCGGGCCGGGC
TTCCCGGAGAGCTCGTGGTTCGCCGACTTCGCCGAGATGGCGCGCCGCGTCTGGCTGCTGCATTGCCTCTTCTACGCGTT
CGACGGCGGCGCCGAGGAGGACGGCGCCTCCATCTTCCAAGTCCGCACCGGTGCGCGCTTCTCCGAAGTGTACATGGAGA
GTGTCAGCGACGGGCGCTCCGACGAGGCCGCCGCCGCCGCCGCCGAGGAACGCGTCGTCGGGTTCACCGTGGTGCCGGGG
TTTAGAGTTGGCCGGACAATGATCCAATGCCGGGTCTACCTGTCGCGGCCGGGACGGCGGCCATGATGGNTTGTGACAAA
GCCGTCTTGTTTCAGGTGTCCGGCGGATGATAAAGGGGGAGGAATGTCCATTTTGGGGCGGCCGTCGAGGTNNCTNNCCC
GCCGGCAGCCGGCTGCGGCGGCGGCGGNGGTGTTGGTGATGATGATCAGTGGGTGGTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis