Browse Element(s) Details


OsAffx.23191.1.S1_at

Description tigr:9629.m01025
TID=OsAffx.23191.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1071011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23191.1.S1_at--964--10571Chr01:5730572..5730596 (25 bp)
TTCTCTTAGATGACAGCTTCAATGC
LOC_Os01g10710
OsAffx.23191.1.S1_at--107--4911Chr01:5730587..5730611 (25 bp)
GCTTCAATGCGAAAGTTGCTGACTT
LOC_Os01g10710
OsAffx.23191.1.S1_at--267--5091Chr01:5730685..5730709 (25 bp)
GCACCTGAATGGCTGACTTCACAAA
LOC_Os01g10710
OsAffx.23191.1.S1_at--170--5491Chr01:5730774..5730798 (25 bp)
GAACATTGACTACTCTCAGTCAGAG
LOC_Os01g10710
OsAffx.23191.1.S1_at--755--6751Chr01:5730805..5730829 (25 bp)
GTTCAGCTCATTACTTTACTGCAAG
LOC_Os01g10710
OsAffx.23191.1.S1_at--484--51Chr01:5730907..5730931 (25 bp)
ATTGAGGTGATGAAGCTTGCCATGT
LOC_Os01g10710
OsAffx.23191.1.S1_at--317--4631Chr01:5730944..5730968 (25 bp)
GCGATAGCAGTAGAAGACCATCCAT
LOC_Os01g10710
OsAffx.23191.1.S1_at--484--5851Chr01:5730959..5730983 (25 bp)
GACCATCCATGTCCGTGGTGGTGAA
LOC_Os01g10710
OsAffx.23191.1.S1_at--243--9811Chr01:5731026..5731050 (25 bp)
TAACTTCTTTGATTTGAGCCCTGCA
LOC_Os01g10710
OsAffx.23191.1.S1_at--641--211Chr01:5731037..5731061 (25 bp)
ATTTGAGCCCTGCAATATCTGTTCC
LOC_Os01g10710
OsAffx.23191.1.S1_at--56--5071Chr01:5731068..5731092 (25 bp)
GCAGCTCAACAGTTCATTGCACCCT
LOC_Os01g10710
Target Sequence 
TTCTCTTAGATGACAGCTTCAATGCGAAAGTTGCTGACTTTGGTCTATCAAAGCTGATCGAGAGGGAGATAAGCAAAGTT
GTGACAAGAATGAAAGGGACACCTGGATACATGGCACCTGAATGGCTGACTTCACAAATCACAGAGAAGGTTGATGTATA
TAGCTTTGGTGTTGTGGTCATGGAAATCATCAGTGGAAGAAAGAACATTGACTACTCTCAGTCAGAGGAGAATGTTCAGC
TCATTACTTTACTGCAAGAGAAGGCAAAGAAAGGCCAGCTTGAAGATCTGGTTGACAAGAATAGTGATGAAATGCACTTA
CACAAGGAGGAAGTGATTGAGGTGATGAAGCTTGCCATGTGGTGTTTGCAGAGCGATAGCAGTAGAAGACCATCCATGTC
CGTGGTGGTGAAGACCATGGAAGGAGAAAGGGCGGTAGATGACAATTTGGGTTATAACTTCTTTGATTTGAGCCCTGCAA
TATCTGTTCCAGTTGAGCAGCTCAACAGTTCATTGCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis