Browse Element(s) Details


OsAffx.22126.1.S1_at

Description gb:NM_188333.1
DB_XREF= gi:34903749
TID=OsAffx.22126.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g107405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22126.1.S1_at--693--7251Chr01:5746245..5746269 (25 bp)
GTCCGACACGTAGGCGAACGCGCAT
NONE
OsAffx.22126.1.S1_at--319--8411Chr01:5746214..5746238 (25 bp)
GGCCCGTGCCGCCTATAAATATAGG
NONE
OsAffx.22126.1.S1_at--912--3091Chr01:5746197..5746221 (25 bp)
AATATAGGCTGCTGCAACGTTGCAC
NONE
OsAffx.22126.1.S1_at--386--9011Chr01:5746185..5746209 (25 bp)
TGCAACGTTGCACCGTCGAACAAAC
NONE
OsAffx.22126.1.S1_at--558--5551Chr01:5746148..5746172 (25 bp)
GAAACCGCAGATTTATTTCCTGATA
NONE
OsAffx.22126.1.S1_at--666--4191Chr01:5746065..5746089 (25 bp)
CCCTGCCCCGTGTTGGGATGGAGAA
NONE
OsAffx.22126.1.S1_at--1061--5771Chr01:5745968..5745992 (25 bp)
GACGACGAAGCCGTTCAGGTTTGCT
LOC_Os01g10740
OsAffx.22126.1.S1_at--674--4031Chr01:5745957..5745981 (25 bp)
CGTTCAGGTTTGCTCCCGAAGTGGA
LOC_Os01g10740
OsAffx.22126.1.S1_at--165--2711Chr01:5745811..5745835 (25 bp)
AAGCTTCACCGGTATGACCCGGATA
LOC_Os01g10740
OsAffx.22126.1.S1_at--1047--8491Chr01:5745781..5745805 (25 bp)
TGGCAGAAGCGTTATGCCCGCGCCG
LOC_Os01g10740
OsAffx.22126.1.S1_at--282--10151Chr01:5745710..5745734 (25 bp)
TATCCAGCAATACCTCAAATACCTC
LOC_Os01g10740
Target Sequence 
GTCCGACACGTAGGCGAACGCGCATGGACACGGCCCGTGCCGCCTATAAATATAGGCTGCTGCAACGTTGCACCGTCGAA
CAAACAAAAGACCAAGCGAAACCGCAGATTTATTTCCTGATATTAAGCGAGGCATATAAAATCAAAGGGTTCGTCAAACC
CATCCGATCCGACCCCTCCGCCCTGCCCCGTGTTGGGATGGAGAACAAAGGCAGCGAGAACGAGAGGAGCCTGGCGAATA
ATGCCGCCGCTGCTGCCGCCGGCGACGTGGAAGAAGAGACGACGAAGCCGTTCAGGTTTGCTCCCGAAGTGGAGAAGTGG
ACGGCGGCGGAGAAAGAGGCGACGCTGGCCTTCTTCCGGGCGGCGAACGCTGAAGCGGCCAAGTACATGGAGATGACGGA
GGAGGACGTGGTGGAGGAGTACCGGCGGGCGGGGAAGCTTCACCGGTATGACCCGGATAAGGAGTGGCAGAAGCGTTATG
CCCGCGCCGCCAGGGCGCACCCGCCGCCGCCTTGTGCCATATCCCGCTTGCCTCATATCCAGCAATACCTCAAATACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis