Browse Element(s) Details


Os.22640.1.A1_at

Description gb:AK067719.1
DB_XREF= gi:32977737
TID=Os.22640.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121K01, full insert sequence.
FL= gb:AK067719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1083011/11enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os11g479801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009416biological_processresponse to light stimulus
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
GO:0008809molecular_functioncarnitine racemase activity
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22640.1.A1_at--783--4691Chr01:5770530..5770554 (25 bp)
GCGGCTTCCTGTACATGAGCGAGGT
LOC_Os01g10830
Os.22640.1.A1_at--685--1592Chr01:5770590..5770614 (25 bp)
AGCTGATCCGGCAGAAGGTCCCCGA
LOC_Os01g10830
Os.22640.1.A1_at--665--4231Chr01:5770611..5770635 (25 bp)
CCGACGCCGTGAACAGGAGGGATCT
LOC_Os01g10830
Os.22640.1.A1_at--1037--4211Chr01:5770788..5770812 (25 bp)
CCGAGACCAGGAAGGCGATTTGGCC
LOC_Os01g10830
Os.22640.1.A1_at--1005--1571Chr01:5770815..5770839 (25 bp)
AGCTCTGGGCCAAGGTGAAGGACCA
LOC_Os01g10830
Os.22640.1.A1_at--559--1931Chr01:5770870..5770894 (25 bp)
ACGGCCGCTGCTGTAGTCTACCTTA
LOC_Os01g10830
Os.22640.1.A1_at--1092--6911Chr01:5770882..5770906 (25 bp)
GTAGTCTACCTTACCGTATGTTGTA
LOC_Os01g10830
Os.22640.1.A1_at--540--731Chr01:5770899..5770923 (25 bp)
ATGTTGTATCGTGTATGCTTCCGCT
LOC_Os01g10830
Os.22640.1.A1_at--667--9071Chr01:5770914..5770938 (25 bp)
TGCTTCCGCTGCATCAAGATTGGTG
LOC_Os01g10830
Os.22640.1.A1_at--661--10851Chr01:5770933..5770957 (25 bp)
TTGGTGCGCTGCAAATGTATCCTCG
LOC_Os01g10830
Os.22640.1.A1_at--154--571Chr01:5770951..5770975 (25 bp)
ATCCTCGCAGGATTGCATGATTTGT
LOC_Os01g10830
Target Sequence 
GCGGCTTCCTGTACATGAGCGAGGTGGACGCCGGCCTCAAGATCGTCGACTTCTTCGCCGAGCTGATCCGGCAGAAGGTC
CCCGACGCCGTGAACAGGAGGGATCTAGTCCTCCGGGGCGACAAGATGACGGCGGCCGACGCCCTGCGGCGGGGCATCGT
GGACGCGGCCGTCGACGGCGGCGTCGACGACGTGGTGGCCGCCGCCGTCCGGGAGGCGGAGGCGCTCGCGGCGAGGGGAT
GGGACGGGGAGATCGTGGCCGAGACCAGGAAGGCGATTTGGCCGGAGCTCTGGGCCAAGGTGAAGGACCACGCCACCGAC
GAGCCTCCGCCGCCGCCGCCACGGCCGCTGCTGTAGTCTACCTTACCGTATGTTGTATCGTGTATGCTTCCGCTGCATCA
AGATTGGTGCGCTGCAAATGTATCCTCGCAGGATTGCATGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22640.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis