Browse Element(s) Details


Os.18766.1.S1_s_at

Description gb:AK099863.1
DB_XREF= gi:32985072
TID=Os.18766.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111B17, full insert sequence.
FL= gb:AK099863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1084011/11Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g1295011/11Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os03g475806/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009933biological_processmeristem organization
GO:0009965biological_processleaf morphogenesis
GO:0016310biological_processphosphorylation
GO:0042538biological_processhyperosmotic salinity response
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18766.1.S1_s_at--1099--73Chr01:7201019..7201043 (25 bp)
ATTGCCCTACAGTAGTGTAGCTGCT
LOC_Os01g12950
Os.18766.1.S1_s_at--748--9872Chr01:7201026..7201050 (25 bp)
TACAGTAGTGTAGCTGCTCCCTGTT
LOC_Os01g12950
Os.18766.1.S1_s_at--293--1192Chr01:7201029..7201053 (25 bp)
AGTAGTGTAGCTGCTCCCTGTTTTT
LOC_Os01g12950
Os.18766.1.S1_s_at--641--1112Chr01:7201032..7201056 (25 bp)
AGTGTAGCTGCTCCCTGTTTTTGTT
LOC_Os01g12950
Os.18766.1.S1_s_at--362--6973Chr01:7201035..7201059 (25 bp)
GTAGCTGCTCCCTGTTTTTGTTTGC
LOC_Os01g12950
Os.18766.1.S1_s_at--36--3812Chr01:7201042..7201066 (25 bp)
CTCCCTGTTTTTGTTTGCTCTTTCA
LOC_Os01g12950
Os.18766.1.S1_s_at--1049--6813Chr01:7201048..7201072 (25 bp)
GTTTTTGTTTGCTCTTTCATCATGT
LOC_Os01g12950
Os.18766.1.S1_s_at--968--10253Chr01:7201051..7201075 (25 bp)
TTTGTTTGCTCTTTCATCATGTAAA
LOC_Os01g12950
Os.18766.1.S1_s_at--736--6853Chr01:7201054..7201078 (25 bp)
GTTTGCTCTTTCATCATGTAAATGC
LOC_Os01g12950
Os.18766.1.S1_s_at--133--9613Chr01:7201064..7201088 (25 bp)
TCATCATGTAAATGCCAATCCCAAT
LOC_Os01g12950
Os.18766.1.S1_s_at--45--3053Chr01:7201086..7201110 (25 bp)
AATCCCAATCGCAATGAACCCTCTT
LOC_Os01g12950
Target Sequence 
ATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAAC
CCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18766.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis