Browse Element(s) Details


Os.1404.1.S1_at

Description gb:AK067763.1
DB_XREF= gi:32977781
TID=Os.1404.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120K02, full insert sequence.
FL= gb:AK067763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1082010/1160S ribosomal protein L11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007049biological_processcell cycle
GO:0010102biological_processlateral root morphogenesis
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1404.1.S1_at--836--8491NONE
TGGCATCAAGTATGACCCATCCACT
NONE
Os.1404.1.S1_at--718--5811Chr01:5768642..5768666 (25 bp)
GACCCATCCACTGGTATTTACGGTA
LOC_Os01g10820
Os.1404.1.S1_at--79--10111Chr01:5768665..5768689 (25 bp)
TATGGACTTCTACGTCGTTCTTGAG
LOC_Os01g10820
Os.1404.1.S1_at--1056--3251Chr01:5768824..5768848 (25 bp)
CAACACCTCCTAAGCGTCACTAGTG
LOC_Os01g10820
Os.1404.1.S1_at--235--3331Chr01:5768841..5768865 (25 bp)
CACTAGTGCCTAGTTCTCTTTAGAA
LOC_Os01g10820
Os.1404.1.S1_at--580--7991Chr01:5768878..5768902 (25 bp)
GGATGTTGGATTTGTATGCTTCTTA
LOC_Os01g10820
Os.1404.1.S1_at--1143--9631Chr01:5768944..5768968 (25 bp)
TCAGTTTTGGTGGTATGTACTTTCA
LOC_Os01g10820
Os.1404.1.S1_at--512--751Chr01:5768958..5768982 (25 bp)
ATGTACTTTCATCTTAATGCTCAGA
LOC_Os01g10820
Os.1404.1.S1_at--349--9091Chr01:5768975..5768999 (25 bp)
TGCTCAGATCTATTTACTCTCTTAG
LOC_Os01g10820
Os.1404.1.S1_at--599--10271Chr01:5769017..5769041 (25 bp)
TTTGACATATGCTACGAACTGCTGT
LOC_Os01g10820
Os.1404.1.S1_at--446--4851Chr01:5769027..5769051 (25 bp)
GCTACGAACTGCTGTCAATGTTGAT
LOC_Os01g10820
Target Sequence 
TGGCATCAAGTATGACCCATCCACTGGTATTTACGGTATGGACTTCTACGTCGTTCTTGAGCGTGCTGGGTACCGTGTTG
CGCGGCGCCGTAGGTGCAAGTCCCGTGTTGGTATCCAGCACAGGGTCACCAAGGAGGATGCCATGAAGTGGTTCCAGGTC
AAGTACGAGGGTGTCATCCTCAACAAGGCCCAAGCCAACACCTCCTAAGCGTCACTAGTGCCTAGTTCTCTTTAGAACTT
GAGTTATTTNGGATGTTGGATTTGTATGCTTCTTAAAACTAAAGATGTTTTGTTATTTTGTCAACTTTGAGTTGGATCAG
TTTTGGTGGTATGTACTTTCATCTTAATGCTCAGATCTATTTACTCTCTTAGCAGAGATAGATATATGATTTGACATATG
CTACGAACTGCTGTCAATGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis