Browse Element(s) Details


Os.52172.2.S1_x_at

Description gb:AK065429.1
DB_XREF= gi:32975447
TID=Os.52172.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023I02, full insert sequence.
FL= gb:AK065429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g129506/11Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g108401/11Shaggy-related protein kinase iota, putative, expressed
LOC_Os03g475801/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12970NANA1+7206712..7208847retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g12980NANA1+7209074..7210053retrotransposon protein, putative, unclassified
LOC_Os01g12990OsAffx.16475.1.S1_at4/111+7212171..7212797hypothetical protein
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009933biological_processmeristem organization
GO:0009965biological_processleaf morphogenesis
GO:0016310biological_processphosphorylation
GO:0042538biological_processhyperosmotic salinity response
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52172.2.S1_x_at--403--4773Chr01:7200859..7200883 (25 bp)
GCTGCTGCTGGTGTTAAGTACGTGA
LOC_Os01g12950
Os.52172.2.S1_x_at--142--8072Chr01:7201247..7201271 (25 bp)
GGAGAAGCACCCTAACGTCAAGCAG
LOC_Os01g12950
Os.52172.2.S1_x_at--1093--2712Chr01:7201266..7201290 (25 bp)
AAGCAGGTATCTTGTGGCGCATTTG
LOC_Os01g12950
Os.52172.2.S1_x_at--798--9091Chr01:7201294..7201318 (25 bp)
TGCTCTGCTGCGTTAACTGCTACAA
LOC_Os01g12950
Os.52172.2.S1_x_at--480--7352Chr01:7201354..7201377 (24 bp)
GTGCAAGTCCATGTCTGATGCTGTT
LOC_Os01g12950
Os.52172.2.S1_x_at--208--2292Chr01:7201996..7202020 (25 bp)
AAATGCTTTGTTGACCCACGTTGTT
LOC_Os01g12950
Os.52172.2.S1_x_at--419--231NONE
ATATTCCAATCGTTCTTCATGCATC
NONE
Os.52172.2.S1_x_at--1074--9551Chr01:7204982..7205006 (25 bp)
TCTTCAAATATCACTGCCATGCTCG
NONE
Os.52172.2.S1_x_at--571--5791Chr01:7205045..7205069 (25 bp)
GACGACTTCACTTGGACGGTCTGGC
NONE
Os.52172.2.S1_x_at--638--951Chr01:7205126..7205150 (25 bp)
AGGACGCCTCAAAGGTCTAGGACCA
NONE
Os.52172.2.S1_x_at--728--10551Chr01:7205172..7205196 (25 bp)
TTCTTTCCCTTGGAGGGCCTATATA
NONE
Target Sequence 
GCTGCTGCTGGTGTTAAGTACGTGACGGGGTATGCTGGTTGAGTAGTAGGGAAGGACTGCAAGGAGAAGCACCCTAACGT
CAAGCAGGTATCTTGTGGCGCATTTGGGTTGCTCTGCTGCGTTAACTGCTACAATGTGTGTTCTGACTTGGTTGATTTGG
TGGTGACAAGTGCAAGTCCATGTCTGATGCTGTTTTGGCACTTGACAAATGCTTTGTTGACCCACGTTGTTTATTAAATC
CCACACAAGTAATGAAGAGGGCATTATACCATTAACAGATGCTATTCCCAATATTCCAATCGTTCTTCATGCATCGATTC
TTCAAATATCACTGCCATGCTCGCCTCGGGCTCCGGGGCGAACTCGTCAAGGAAGGACGCCGACGACTTCACTTGGACGG
TCTGGCCCGCATTCTCGGCCACGATGCAGCGGTGGTGGCTATGGCTTCGGCGACGCTGGGGAAGGACGCCTCAAAGGTCT
AGGACCACGCCCTCGCATCTAGTTTTTTTTCTTTCCCTTGGAGGGCCTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52172.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis