Browse Element(s) Details


Os.49482.1.S1_at

Description gb:AK107876.1
DB_XREF= gi:32993085
TID=Os.49482.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D01, full insert sequence.
FL= gb:AK107876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1292011/11thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49482.1.S1_at--1012--3931Chr01:7173326..7173350 (25 bp)
CGGACGGCGTGCACAGGTTCACCAT
LOC_Os01g12920
Os.49482.1.S1_at--540--1011Chr01:7173340..7173364 (25 bp)
AGGTTCACCATCAGCCAGGCCATGT
LOC_Os01g12920
Os.49482.1.S1_at--147--1931Chr01:7173386..7173410 (25 bp)
ACGGCGTACGGTTCCTCCATGGATC
LOC_Os01g12920
Os.49482.1.S1_at--458--10711Chr01:7173423..7173447 (25 bp)
TTGCTCTCTTCTCCTGTGAATCGGC
LOC_Os01g12920
Os.49482.1.S1_at--114--4271Chr01:7173472..7173496 (25 bp)
CCGGCGAATGATGATTGCGCGCGCA
LOC_Os01g12920
Os.49482.1.S1_at--162--931Chr01:7173603..7173627 (25 bp)
AGGCAGTGGATGACCTCTACTCGGG
LOC_Os01g12920
Os.49482.1.S1_at--141--10651Chr01:7173678..7173702 (25 bp)
TTCCTCTAAAAATCGCTTTCTCTTC
LOC_Os01g12920
Os.49482.1.S1_at--170--9531Chr01:7173696..7173720 (25 bp)
TCTCTTCTTTTCTGATTTCATCATC
LOC_Os01g12920
Os.49482.1.S1_at--476--6511Chr01:7173709..7173733 (25 bp)
GATTTCATCATCTCAACACCTAAAG
LOC_Os01g12920
Os.49482.1.S1_at--1107--3211Chr01:7173752..7173776 (25 bp)
CAAGATAGTGATAATGGCGTCCATT
LOC_Os01g12920
Os.49482.1.S1_at--115--4631Chr01:7173768..7173792 (25 bp)
GCGTCCATTCGAAAGTGCCAGTAAC
LOC_Os01g12920
Target Sequence 
CGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCAT
GGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCTCCGGCGAATGATGA
TTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGT
GCGGAGGAAGGCGTCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATG
GCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGATTTCATCATCTCAAC
ACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGTCCATTCGAAAGTGCCAGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis