Browse Element(s) Details


Os.24674.1.S1_at

Description gb:AK065381.1
DB_XREF= gi:32975399
TID=Os.24674.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003E06, full insert sequence.
FL= gb:AK065381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1295011/11Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g442801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12970NANA1+7206712..7208847retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g12980NANA1+7209074..7210053retrotransposon protein, putative, unclassified
LOC_Os01g12990OsAffx.16475.1.S1_at4/111+7212171..7212797hypothetical protein
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24674.1.S1_at--139--9772Chr01:7201911..7201935 (25 bp)
TAATCTGGTTGGCTATTTGATATCA
LOC_Os01g12950
Os.24674.1.S1_at--57--2512Chr01:7201969..7201993 (25 bp)
AACATACGACAGGTTTTGGCACTTG
LOC_Os01g12950
Os.24674.1.S1_at--347--3031Chr01:7202143..7202167 (25 bp)
AATGCCTTGCATGTGTAATTCTTGT
LOC_Os01g12950
Os.24674.1.S1_at--431--7072Chr01:7202157..7202181 (25 bp)
GTAATTCTTGTACATATACTCCCTG
LOC_Os01g12950
Os.24674.1.S1_at--224--3572Chr01:7202169..7202193 (25 bp)
CATATACTCCCTGAACTGTTATTAA
LOC_Os01g12950
Os.24674.1.S1_at--361--831Chr01:7202200..7202224 (25 bp)
ATGGTTCATATGATTCTGTCCCGTG
LOC_Os01g12950
Os.24674.1.S1_at--1014--6552Chr01:7202211..7202235 (25 bp)
GATTCTGTCCCGTGTTTGATTAAAA
LOC_Os01g12950
Os.24674.1.S1_at--505--7832Chr01:7202357..7202381 (25 bp)
GGTAATACAATGATGTCCTGTTGCC
LOC_Os01g12950
Os.24674.1.S1_at--304--8811Chr01:7202375..7202399 (25 bp)
TGTTGCCTTGCTTCTATAACGTGGC
LOC_Os01g12950
Os.24674.1.S1_at--386--1012Chr01:7202406..7202430 (25 bp)
AGGTTGGGCTACTCAATGTCGCTAA
LOC_Os01g12950
Os.24674.1.S1_at--576--7233Chr01:7202423..7202447 (25 bp)
GTCGCTAAGGGCTACTATGGCTCAG
LOC_Os01g12950
Target Sequence 
TAATCTGGTTGGCTATTTGATATCAGGTGAAAGCAAATATTTGAATGATATTATGTGAAACATACGACAGGTTTTGGCAC
TTGACAAATGCTTTGTTGACCCACGTNGTTTNTTAAATCCCACACAAGTAANGAAGAGGGCATTATACCATTAACAGATG
CTATTCCCAATATTCCAATCGTAAGTTTTATTTTATGTTAGTGAAAATCTAGTTTTCATTGTNTTCTCCATAAATGCCTT
GCATGTGTAATTCTTGTACATATACTCCCTGAACTGTTATTAATATAGTATGGTTCATATGATTCTGTCCCGTGTTTGAT
TAAAAAATTTAGGATATCGCCTAAAAGATGCTATTTCTAATTTCATGTTAGAATGATGGCATAGAGTAGAATGAATTGTA
CCTTTGTTTGTAAGTTAAAAACTTTGGGTTATTTATTCTNGTATTTGGTAATACAATGATGTCCTGTTGCCTTGCTTCTA
TAACGTGGCAATAATAGGTTGGGCTACTCAATGTCGCTAAGGGCTACTATGGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis