Browse Element(s) Details


Os.38009.1.S1_at

Description gb:AK065732.1
DB_XREF= gi:32975750
TID=Os.38009.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037L22, full insert sequence.
FL= gb:AK065732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1300010/11ethylene-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12970NANA1+7206712..7208847retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g12980NANA1+7209074..7210053retrotransposon protein, putative, unclassified
LOC_Os01g12990OsAffx.16475.1.S1_at4/111+7212171..7212797hypothetical protein
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38009.1.S1_at--461--651Chr01:7213655..7213679 (25 bp)
ATGAACCTGCGGTAGGCCGGCCGGG
LOC_Os01g13000
Os.38009.1.S1_at--756--8371Chr01:7213637..7213661 (25 bp)
GGCCGGGCCTACTGCTACACGTTCA
LOC_Os01g13000
Os.38009.1.S1_at--280--9911Chr01:7213628..7213652 (25 bp)
TACTGCTACACGTTCATCTTCGATC
LOC_Os01g13000
Os.38009.1.S1_at--160--4851Chr01:7213624..7213648 (25 bp)
GCTACACGTTCATCTTCGATCATAT
LOC_Os01g13000
Os.38009.1.S1_at--262--6751Chr01:7213617..7213641 (25 bp)
GTTCATCTTCGATCATATGCACAGA
LOC_Os01g13000
Os.38009.1.S1_at--113--591Chr01:7213549..7213573 (25 bp)
ATCCACGCACGTACTATTATTTTGG
LOC_Os01g13000
Os.38009.1.S1_at--512--3111Chr01:7213347..7213371 (25 bp)
AATATGTACTATTGCACACACTTTG
LOC_Os01g13000
Os.38009.1.S1_at--904--7011Chr01:7213342..7213366 (25 bp)
GTACTATTGCACACACTTTGCTACG
LOC_Os01g13000
Os.38009.1.S1_at--1054--51Chr01:7213337..7213361 (25 bp)
ATTGCACACACTTTGCTACGTATAT
LOC_Os01g13000
Os.38009.1.S1_at--144--3311Chr01:7213333..7213357 (25 bp)
CACACACTTTGCTACGTATATAATA
LOC_Os01g13000
Os.38009.1.S1_at--944--10171Chr01:7213315..7213339 (25 bp)
TATAATATACATTTCCTTGCTGTTC
NONE
Target Sequence 
ATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCAT
CGGTGNNNNAAGTTTTGGCCAAATTNAATGNCATCCACGCACGTACTATTATTTTGGNTNTTTGNTNTNTGGNTTTCGTG
TGATTTTNANAACGATGNATTNATTTTCTCCTTNATNGGCGTTTATAGGGCTTAATTNAATTAGCTGNTCGATNCGATTA
TCGAAATATNACATACCATNCAGGAGCAGTNCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTNAT
NATNATNATGNCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis