Browse Element(s) Details


OsAffx.22080.1.S1_at

Description tigr:9629.m01271
TID=OsAffx.22080.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1302011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12990OsAffx.16475.1.S1_at4/111+7212171..7212797hypothetical protein
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22080.1.S1_at--125--5631Chr01:7236650..7236674 (25 bp)
GACACAAGCAGGGATACACACGAAC
LOC_Os01g13020
OsAffx.22080.1.S1_at--960--10711Chr01:7236694..7236718 (25 bp)
TTGCTTTATGTCCTCGATCGGCCGA
LOC_Os01g13020
OsAffx.22080.1.S1_at--430--9191Chr01:7236768..7236792 (25 bp)
TGCCTGCACGCGATCGAGTGCGAGA
LOC_Os01g13020
OsAffx.22080.1.S1_at--374--6111Chr01:7236783..7236807 (25 bp)
GAGTGCGAGATCCTCGGAACTCATC
LOC_Os01g13020
OsAffx.22080.1.S1_at--568--8171Chr01:7236798..7236822 (25 bp)
GGAACTCATCGCACGCTGCTGCTGT
LOC_Os01g13020
OsAffx.22080.1.S1_at--601--5891Chr01:7237406..7237430 (25 bp)
GAGCTCGGCGATACAAATCCACCAA
LOC_Os01g13020
OsAffx.22080.1.S1_at--981--2251Chr01:7237420..7237444 (25 bp)
AAATCCACCAACTAGGACCTTGGCG
LOC_Os01g13020
OsAffx.22080.1.S1_at--661--2571Chr01:7237466..7237490 (25 bp)
AACGGGCTTAGCAACGGAGACGACA
LOC_Os01g13020
OsAffx.22080.1.S1_at--208--2531Chr01:7237490..7237514 (25 bp)
AACTACGGCAGCTCTATATTCTCTC
LOC_Os01g13020
OsAffx.22080.1.S1_at--396--2131Chr01:7237559..7237583 (25 bp)
ACAGGATCATCTACCATGCGGCGCT
LOC_Os01g13020
OsAffx.22080.1.S1_at--242--1051Chr01:7237606..7237630 (25 bp)
AGGTGACCCTACGACAGACAGATCC
LOC_Os01g13020
Target Sequence 
GACACAAGCAGGGATACACACGAACAACCCTTCCTTCTTTTCCTTTGCTTTATGTCCTCGATCGGCCGACGCTGCAGCCT
GACGCTTCGCTTGCCGCTGCCTTCCACCCGTGCCTGCCTGCCTGCACGCGATCGAGTGCGAGATCCTCGGAACTCATCGC
ACGCTGCTGCTGTGCTTGCGGTTTCGGCGGAGTTGGTCAAGTAGGGGAGTACGAGCGCTGCCACAGCGTACCGGGCGGTG
GGCTCGAGCTCGGCGATACAAATCCACCAACTAGGACCTTGGCGATGGTAGGGACATCGAGCGGGAACGGGCTTAGCAAC
GGAGACGACAACTACGGCAGCTCTATATTCTCTCTCAAATCCCCTTTGGCGTGGACCCAGCCGCCGCCTTCCCTCCGCAC
AGGATCATCTACCATGCGGCGCTGCGACGGGATCGATCTGCCCCCAGGTGACCCTACGACAGACAGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis