Browse Element(s) Details


OsAffx.24964.2.S1_s_at

Description gb:NM_188618.1
DB_XREF= gi:34904319
TID=OsAffx.24964.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1305011/11hypothetical protein
LOC_Os11g045807/11hypothetical protein
LOC_Os01g642305/11hypothetical protein
LOC_Os04g521902/11Vacuolar sorting receptor 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.2.S1_s_at--741--4691Chr01:7260182..7260206 (25 bp)
GCGGCGTCGGGTGCTACGACTACAT
LOC_Os01g13050
OsAffx.24964.2.S1_s_at--728--9433Chr11:1939733..1939757 (25 bp)
TCGGGTGCTACGACTACATCGAGAA
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--798--7772Chr11:1939736..1939760 (25 bp)
GGTGCTACGACTACATCGAGAACGA
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--72--9072Chr11:1939738..1939762 (25 bp)
TGCTACGACTACATCGAGAACGACG
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--990--1914Chr11:1939771..1939792 (22 bp)
ACGGAGCAGATTGTTCAGGTTGGAC
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--748--1253Chr11:1939778..1939896 (25 bp)
AGATTGTTCAGGTTGGACATGGCGC
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--869--1733Chr11:1939910..1939934 (25 bp)
ACCATCTTGCCGACGCTGGTGATCA
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--1137--9574Chr11:1939914..1939938 (25 bp)
TCTTGCCGACGCTGGTGATCAACAA
LOC_Os11g04580
OsAffx.24964.2.S1_s_at--594--9171Chr01:7260372..7260396 (25 bp)
TGCCGACGCTGGTGATCAACAATAT
LOC_Os01g13050
OsAffx.24964.2.S1_s_at--376--4091Chr01:7260375..7260399 (25 bp)
CGACGCTGGTGATCAACAATATGCA
LOC_Os01g13050
OsAffx.24964.2.S1_s_at--83--7411Chr01:7260383..7260407 (25 bp)
GTGATCAACAATATGCAGTACCGGG
LOC_Os01g13050
Target Sequence 
GCGGCGTCGGGTGCTACGACTACATCGAGAACGACGTGCTCAAGACGGAGCAGATTGTTCAGGTTGGACATGGCGCTAGA
GGGGATGTGACCATCTTGCCGACGCTGGTGATCAACAATATGCAGTACCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis