Browse Element(s) Details


OsAffx.23222.1.S1_s_at

Description tigr:9629.m01280
TID=OsAffx.23222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1309011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23222.1.S1_s_at--1007--4731Chr01:7279251..7279275 (25 bp)
GCTGTTGACAGTCCAATGTCTAGCT
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--364--2991Chr01:7279265..7279289 (25 bp)
AATGTCTAGCTTCACTCACTTCATC
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--293--2051Chr01:7279282..7279306 (25 bp)
ACTTCATCTCGCTTCCGTTGGGTAT
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--1115--7851Chr01:7279302..7279326 (25 bp)
GGTATCCACCCACAACTTGTTGATA
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--21--7831Chr01:7279345..7279369 (25 bp)
GGTCAATCCTGACTTCTAATGAATA
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--183--351Chr01:7280289..7280309 (21 bp)
ATAAAGCTGCAGGTTTCCGCATCGA
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--554--7871Chr01:7280296..7280320 (25 bp)
GGTTTCCGCATCGACGAGTCAATAT
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--723--6091Chr01:7280311..7280335 (25 bp)
GAGTCAATATTTGCTATTCCCGAAT
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--390--10151Chr01:7280325..7280349 (25 bp)
TATTCCCGAATCACTTCACCTAACG
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--1037--2071Chr01:7280378..7280402 (25 bp)
ACATTGCTAAGGCTTCCAGTGTGCT
LOC_Os01g13090
OsAffx.23222.1.S1_s_at--585--3411Chr01:7280520..7280544 (25 bp)
CAGACCTATCTCCATACAGCTTAGA
LOC_Os01g13090
Target Sequence 
GCTGTTGACAGTCCAATGTCTAGCTTCACTCACTTCATCTCGCTTCCGTTGGGTATCCACCCACAACTTGTTGATAAGCT
GAATGAATTCAAGAGGTCAATCCTGACTTCTAATGAATATAAAGCTGCAGGTTTCCGCATCGACGAGTCAATATTTGCTA
TTCCCGAATCACTTCACCTAACGGTTCTTATGTTGGAGCTAAAGGGTGAGAACATTGCTAAGGCTTCCAGTGTGCTCCAG
TCAGTATCGGACAAACTAATGGAAGCCTTGAAAAACAGACCTATCTCCATACAGCTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23222.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis