Browse Element(s) Details


Os.52849.1.S1_x_at

Description gb:AK069592.1
DB_XREF= gi:32979616
TID=Os.52849.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I12, full insert sequence.
FL= gb:AK069592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1313011/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0018987biological_processosmoregulation
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52849.1.S1_x_at--33--6231Chr01:7299997..7300021 (25 bp)
GAGGCCGTGTTCACGTTCACGCTGC
LOC_Os01g13130
Os.52849.1.S1_x_at--1096--10511Chr01:7300012..7300036 (25 bp)
TTCACGCTGCTGCTGGTGATCTGCG
LOC_Os01g13130
Os.52849.1.S1_x_at--1152--8551Chr01:7300192..7300216 (25 bp)
TGGGCCCACCACTGGGTCTACTGGG
LOC_Os01g13130
Os.52849.1.S1_x_at--852--4671Chr01:7300243..7300267 (25 bp)
GCGGTGGTGGCCTACGAACTCCTGT
LOC_Os01g13130
Os.52849.1.S1_x_at--316--1851Chr01:7300256..7300280 (25 bp)
ACGAACTCCTGTTCATGGACGTGGA
LOC_Os01g13130
Os.52849.1.S1_x_at--565--5291Chr01:7300333..7300357 (25 bp)
GAAGGCGCGCTCACGTGAGGTCCAC
LOC_Os01g13130
Os.52849.1.S1_x_at--765--7271Chr01:7300352..7300376 (25 bp)
GTCCACGTGGCTTCGGGAGATTGCA
LOC_Os01g13130
Os.52849.1.S1_x_at--465--8691Chr01:7300383..7300407 (25 bp)
TGTGCGTGCGTTTTCGGCCGTTGAT
LOC_Os01g13130
Os.52849.1.S1_x_at--1096--10331Chr01:7300393..7300417 (25 bp)
TTTTCGGCCGTTGATTGGTGTAATC
LOC_Os01g13130
Os.52849.1.S1_x_at--737--10371Chr01:7300504..7300528 (25 bp)
TTTTTTGTGTGTATGTGCCGGTACA
LOC_Os01g13130
Os.52849.1.S1_x_at--497--9151Chr01:7300519..7300543 (25 bp)
TGCCGGTACAAGTGAGGTTTTGCTC
LOC_Os01g13130
Target Sequence 
GAGGCCGTGTTCACGTTCACGCTGCTGCTGGTGATCTGCGCCACCATCCTCGACCCGAGGAGGGCGGCGCCGCCGGGGAC
GGGGCCGCTGCTGACGGGGCTCCTCGTCGGCGCCAACACCGTCGCCGGCGGCGCGCTCACCGGCGCGTCCATGAACCCGG
CGAGGTCGTTCGGGCCGGCGCTGGCCACCGGCGAGTGGGCCCACCACTGGGTCTACTGGGTCGGGCCGCTGGCAGGTGGG
CCCCTCGCGGTGGTGGCCTACGAACTCCTGTTCATGGACGTGGAGGACGCCGGTGGGGCCCACCAGCCGCTGCCGCAGGA
GTGAAGTGAAGCCGGGGAAGGCGCGCTCACGTGAGGTCCACGTGGCTTCGGGAGATTGCACGGCCGTGTGCGTGCGTTTT
CGGCCGTTGATTGGTGTAATCTCCAGATGGAATTATTTTTGTACGTTTGATTTTTTTTTCCATTTTGTTTAAAAAAAAAT
GGGAGGCGTGCGTGTAAATTTGGGGTTTTTTTTTGTGTGTATGTGCCGGTACAAGTGAGGTTTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52849.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis