Browse Element(s) Details


OsAffx.8592.1.S1_at

Description gb:XM_354527.1
DB_XREF= gi:35192208
TID=OsAffx.8592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g450701/11Remorin, C-terminal region family protein, expressed
LOC_Os01g131001/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8592.1.S1_at--894--9731Chr07:26331646..26331781 (25 bp)
TCAATCATCGCCCATCCAAAATAAA
NONE
OsAffx.8592.1.S1_at--836--10358Chr07:29491352..29491679 (25 bp)
TTTATTTGTGGCTGCTGGGATTCGA
NONE
OsAffx.8592.1.S1_at--1141--4391NONE
GCCACAACGTTGTTTGCTCCAGCAA
NONE
OsAffx.8592.1.S1_at--713--472Chr01:7285554..7285619 (25 bp)
ATCTGCTTCTACTAGATCACCTCAA
LOC_Os01g13100
OsAffx.8592.1.S1_at--797--3711Chr07:26330501..26330525 (25 bp)
CTCAACCTCCTCTGAAAGTCTTAAA
NONE
OsAffx.8592.1.S1_at--1134--5231Chr07:26330418..26330442 (25 bp)
GAATCAGTTCCAGTAGCGTGCCGGA
NONE
OsAffx.8592.1.S1_at--548--1111Chr07:26330297..26330376 (25 bp)
AGTGACGGACAGGTTGCCAGGAATC
NONE
OsAffx.8592.1.S1_at--217--6171Chr07:26330256..26330280 (25 bp)
GAGGAGGACGAACACCTGTCCAGAT
NONE
OsAffx.8592.1.S1_at--988--8691Chr07:26330204..26330228 (25 bp)
TGTCTCCCCATGGTTAAGCCGAAAA
NONE
OsAffx.8592.1.S1_at--742--2751Chr07:26330179..26330203 (25 bp)
AAGACAGTTCGTTTCTGTGCAGCTG
NONE
OsAffx.8592.1.S1_at--780--4431Chr07:26330130..26330154 (25 bp)
GCCATCGTCAGTGGACAGGTTGCTC
NONE
Target Sequence 
TCAATCATCGCCCATCCAAAATAAACCCCAACTCAGCAATAATAAAAATTTTATTTGTGGCTGCTGGGATTCGAGCCCAG
GTCTCCACGGCCACAACGTTGTTTGCTCCAGCAAAAGAAGCTACTAGCATCAACAAATCGATTATTCTCATGATCTCATC
AGCATCTGCTTCTACTAGATCACCTCAACCTCCTCTGAAAGTCTTAAACCAAGAACAAGAACAGGTTACAATCACTTTGA
ACCGAAGAAAGCAAATTAATCTCTCTGAATCAGTTCCAGTAGCGTGCCGGATTCGTCAGGCAGGTGCAGATGAGAGAATC
AGGGGCGAGTTGAGTGACGGACAGGTTGCCAGGAATCGAATTATCGAAGGAGAGAGGAGGACGAACACCTGTCCAGATCC
AACGCAACCAACGAAGCTCATGGCATGTCTCCCCATGGTTAAGCCGAAAAAAGACAGTTCGTTTCTGTGCAGCTGGGTTA
GTTGCGATATGTATATAAAGCCATCGTCAGTGGACAGGTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis