Browse Element(s) Details


OsAffx.14270.1.S1_at

Description tigr:9632.m04330
TID=OsAffx.14270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14270.1.S1_at--848--5291Chr04:26437030..26437054 (25 bp)
GAAGGCAAAGGTGGCTACCTAGTCA
LOC_Os04g45050
OsAffx.14270.1.S1_at--310--7731Chr04:26437021..26437045 (25 bp)
GGTGGCTACCTAGTCAAAGTTATTG
LOC_Os04g45050
OsAffx.14270.1.S1_at--1100--2031Chr04:26436967..26436991 (25 bp)
ACTTTGGGAATGAAGCGGTGCCTGC
LOC_Os04g45050
OsAffx.14270.1.S1_at--477--5271Chr04:26436960..26436984 (25 bp)
GAATGAAGCGGTGCCTGCAACACAG
LOC_Os04g45050
OsAffx.14270.1.S1_at--376--8051Chr04:26436934..26436958 (25 bp)
GGAGATGCAATGTCCTACACGAACT
LOC_Os04g45050
OsAffx.14270.1.S1_at--628--9851Chr04:26436919..26436943 (25 bp)
TACACGAACTCACTGGGTGCCGATT
LOC_Os04g45050
OsAffx.14270.1.S1_at--920--1951Chr04:26436908..26436932 (25 bp)
ACTGGGTGCCGATTTCAATGTGAGA
LOC_Os04g45050
OsAffx.14270.1.S1_at--1065--831Chr04:26436855..26436879 (25 bp)
ATGGAACTTGTGGACATGCGACGGT
LOC_Os04g45050
OsAffx.14270.1.S1_at--447--5611Chr04:26436827..26436851 (25 bp)
GACAATGGAGCAGACACCGGTTCAA
LOC_Os04g45050
OsAffx.14270.1.S1_at--209--1711Chr04:26436722..26436836 (25 bp)
ACCGGTTCAAGGCTCAAGGATCCTT
LOC_Os04g45050
OsAffx.14270.1.S1_at--387--7971Chr04:26436705..26436729 (25 bp)
GGATCCTTGGGAAACATGAGCTTGA
LOC_Os04g45050
Target Sequence 
GAAGGCAAAGGTGGCTACCTAGTCAAAGTTATTGAGGCAGGGGTGTCATGGGCGTCAAAGGGGACTTTGGGAATGAAGCG
GTGCCTGCAACACAGGGGAGATGCAATGTCCTACACGAACTCACTGGGTGCCGATTTCAATGTGAGAAGAAGGAAGACGG
GGGATCTTAGAGGAGATGGAACTTGTGGACATGCGACGGTGGAGACAATGGAGCAGACACCGGTTCAAGGCTCAAGGATC
CTTGGGAAACATGAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis