Browse Element(s) Details


OsAffx.14269.1.S1_at

Description tigr:9632.m04327
TID=OsAffx.14269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4503011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14269.1.S1_at--148--1651Chr04:26424486..26424506 (21 bp)
AGCCCGGACGCGGACCAAGGTCGAT
LOC_Os04g45030
OsAffx.14269.1.S1_at--151--171Chr04:26423289..26423313 (25 bp)
ATTATAGGCCTAATGGGCACAGCAC
LOC_Os04g45030
OsAffx.14269.1.S1_at--150--9771Chr04:26423279..26423303 (25 bp)
TAATGGGCACAGCACGGCCATGGAC
LOC_Os04g45030
OsAffx.14269.1.S1_at--591--5071Chr04:26423268..26423292 (25 bp)
GCACGGCCATGGACCGTACCGGCAT
LOC_Os04g45030
OsAffx.14269.1.S1_at--125--6991Chr04:26423253..26423277 (25 bp)
GTACCGGCATGGCTCTTCTGGCCAG
LOC_Os04g45030
OsAffx.14269.1.S1_at--1022--1631Chr04:26423210..26423234 (25 bp)
AGCGTGCCAGCACTGCACAGCATGG
LOC_Os04g45030
OsAffx.14269.1.S1_at--207--2151Chr04:26423194..26423218 (25 bp)
ACAGCATGGCTTGCGTTCCGGGCAC
LOC_Os04g45030
OsAffx.14269.1.S1_at--420--10631Chr04:26423179..26423203 (25 bp)
TTCCGGGCACGGTACGACCTCAACG
LOC_Os04g45030
OsAffx.14269.1.S1_at--204--9951Chr04:26423167..26423191 (25 bp)
TACGACCTCAACGAGTGAGCAGAAG
LOC_Os04g45030
OsAffx.14269.1.S1_at--1089--5931Chr04:26423151..26423175 (25 bp)
GAGCAGAAGGCCGAAACGACAGTAC
LOC_Os04g45030
OsAffx.14269.1.S1_at--527--1851Chr04:26423136..26423160 (25 bp)
ACGACAGTACACAAGAGCCAGTTGG
LOC_Os04g45030
Target Sequence 
AGCCCGGACGCGGACCAAGGTCGATGACAATTGACAAGTTTGAGGGACCTTCGGTGTACTTTTTCCGAAAGATTATAGGC
CTAATGGGCACAGCACGGCCATGGACCGTACCGGCATGGCTCTTCTGGCCAGGCCATGTCACCCTGGCCCAGCGTGCCAG
CACTGCACAGCATGGCTTGCGTTCCGGGCACGGTACGACCTCAACGAGTGAGCAGAAGGCCGAAACGACAGTACACAAGA
GCCAGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis