Browse Element(s) Details


OsAffx.4095.1.S1_at

Description tigr:9632.m04331
TID=OsAffx.4095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4506011/11typical P-type R2R3 Myb protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4095.1.S1_at--186--8171Chr04:26441744..26441768 (25 bp)
GGAACACCAACGTCAAGAAGCAGCT
LOC_Os04g45060
OsAffx.4095.1.S1_at--815--3231Chr04:26441757..26441781 (25 bp)
CAAGAAGCAGCTCCGCCAGGGCCAG
LOC_Os04g45060
OsAffx.4095.1.S1_at--546--3951Chr04:26441999..26442023 (25 bp)
CGGACATCTACCTGCGCCTCTGGAA
LOC_Os04g45060
OsAffx.4095.1.S1_at--451--9151Chr04:26442011..26442035 (25 bp)
TGCGCCTCTGGAACTCCGAGGTCGG
LOC_Os04g45060
OsAffx.4095.1.S1_at--1153--5431Chr04:26442021..26442045 (25 bp)
GAACTCCGAGGTCGGTGACTCGTTC
LOC_Os04g45060
OsAffx.4095.1.S1_at--185--4071Chr04:26442072..26442096 (25 bp)
CGAGGATCAAGAGCCGGCGAACGCA
LOC_Os04g45060
OsAffx.4095.1.S1_at--1024--1371Chr04:26442081..26442105 (25 bp)
AGAGCCGGCGAACGCATCAGACGAA
LOC_Os04g45060
OsAffx.4095.1.S1_at--105--4111Chr04:26442089..26442113 (25 bp)
CGAACGCATCAGACGAAGCGGCGCC
LOC_Os04g45060
OsAffx.4095.1.S1_at--1028--2671Chr04:26442104..26442128 (25 bp)
AAGCGGCGCCGGTCTCGGCGACATT
LOC_Os04g45060
OsAffx.4095.1.S1_at--128--5771Chr04:26442187..26442211 (25 bp)
GACGAGTACCAGGTGTTCCTGGACC
LOC_Os04g45060
OsAffx.4095.1.S1_at--266--8411Chr04:26442216..26442240 (25 bp)
GGCCGAGGACTTCGAGCTGTTCCAC
LOC_Os04g45060
Target Sequence 
GGAACACCAACGTCAAGAAGCAGCTCCGCCAGGGCCAGGCGGCCGCCGTCGGCGAGCAGGCCGCGCTGGCGAGCCTCGGC
GGCGGCGCGGCCAGCTGCCCCGCGGCGCGCCACATGGCGCAGTGGGAGACCGCGCGCCTCGAGGCAGAGGCGCGCCTCTC
CCTCCTCTCCGGCACCACCTCGGTCGCGACCGCCAGCGTCGCTGCCTCCTCGTCCTCGTCGTCCACAGCCGCGGCCGGCG
GCGCCGAGGCGCCGCCGGACATCTACCTGCGCCTCTGGAACTCCGAGGTCGGTGACTCGTTCCGCAAGTCCGCGCGCTCG
GCGGCGCGCGAGGATCAAGAGCCGGCGAACGCATCAGACGAAGCGGCGCCGGTCTCGGCGACATTCGCACGACCCGGCGA
CGACTCCTCGGCGGCGTCCAACGTGACCGCGGCCGCGGCGGCGGACGAGTACCAGGTGTTCCTGGACCTGGCGGCCGAGG
ACTTCGAGCTGTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis