Browse Element(s) Details


OsAffx.26469.2.S1_at

Description tigr:9632.m04338
TID=OsAffx.26469.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein Z, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4512011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26469.2.S1_at--777--1231Chr04:26464289..26464313 (25 bp)
AGTTCCACGGCCTGGAGTTCAAGGT
LOC_Os04g45120
OsAffx.26469.2.S1_at--635--3331Chr04:26464294..26464318 (25 bp)
CACGGCCTGGAGTTCAAGGTCCTCC
LOC_Os04g45120
OsAffx.26469.2.S1_at--1120--8071Chr04:26464481..26464505 (25 bp)
GGAGCCGGCAGATCGTCACCCCGTG
LOC_Os04g45120
OsAffx.26469.2.S1_at--364--8271Chr04:26464487..26464511 (25 bp)
GGCAGATCGTCACCCCGTGCAAGGT
LOC_Os04g45120
OsAffx.26469.2.S1_at--386--7571Chr04:26464548..26464572 (25 bp)
GGGCGCGCTGGCACAGCTCGGGCTG
LOC_Os04g45120
OsAffx.26469.2.S1_at--794--4271Chr04:26464602..26464626 (25 bp)
CCTGTCCAGGATGGCCGTGAACACG
LOC_Os04g45120
OsAffx.26469.2.S1_at--861--991Chr04:26464609..26464633 (25 bp)
AGGATGGCCGTGAACACGCCGCCCG
LOC_Os04g45120
OsAffx.26469.2.S1_at--664--4671Chr04:26464633..26464657 (25 bp)
GCGGGGCTCTACGTGTCGACCATGA
LOC_Os04g45120
OsAffx.26469.2.S1_at--777--7511Chr04:26464702..26464726 (25 bp)
GTGGAGGCGATGTACTCGCCTAGCA
LOC_Os04g45120
OsAffx.26469.2.S1_at--1066--9871Chr04:26464714..26464738 (25 bp)
TACTCGCCTAGCAGCCCGGGCTATA
LOC_Os04g45120
OsAffx.26469.2.S1_at--775--5071Chr04:26464724..26464748 (25 bp)
GCAGCCCGGGCTATAGCCCCGGATA
LOC_Os04g45120
Target Sequence 
AGTTCCACGGCCTGGAGTTCAAGGTCCTCCAGCTCTTCTACAAGATGGTCGGCCGCGACGGCCAGGTCGACTTCGGGTTC
GGTGCGCCGTGCTTCTGCATGCTCGTCTTCCTCCCGATCAAGCGCGACGGCCTCCGCCACCTCCTGCGCATGGCCGTCAC
CGAGCCGGACTTCGTCACGCGGTGCGTGCCCCGGAGCCGGCAGATCGTCACCCCGTGCAAGGTGCCCAAGTTCAAGTTCT
CCTCCCAGCTCGACGCCGGGGGCGCGCTGGCACAGCTCGGGCTGGGCGCGCCGTTCGACCCTGACGCCGCCGACCTGTCC
AGGATGGCCGTGAACACGCCGCCCGCGGGGCTCTACGTGTCGACCATGAGGCAGAAGTGCGCCGTGGAGGTCGACGAGGA
GGGCACGACGGCGGTGGAGGCGATGTACTCGCCTAGCAGCCCGGGCTATAGCCCCGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26469.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis