Browse Element(s) Details


Os.26579.1.S1_at

Description gb:AK066666.1
DB_XREF= gi:32976684
TID=Os.26579.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073C02, full insert sequence.
FL= gb:AK066666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26579.1.S1_at--517--5851Chr04:26472990..26473014 (25 bp)
GACCAGGTTCATCCAAGAGGATCTA
LOC_Os04g45140
Os.26579.1.S1_at--362--7971Chr04:26473008..26473032 (25 bp)
GGATCTAACGATGGACCGTGTCTAC
LOC_Os04g45140
Os.26579.1.S1_at--692--6831Chr04:26473041..26473065 (25 bp)
GTTTCACCTTCTGACAGAGTACGCT
LOC_Os04g45140
Os.26579.1.S1_at--181--3431Chr04:26473055..26473079 (25 bp)
CAGAGTACGCTAAGCTGCTCAAGTA
LOC_Os04g45140
Os.26579.1.S1_at--1066--2831Chr04:26473075..26473099 (25 bp)
AAGTACAAGCCCACGGTGCCTGACA
LOC_Os04g45140
Os.26579.1.S1_at--753--7271Chr04:26473090..26473114 (25 bp)
GTGCCTGACAGAGCCGTCGAGGTCA
LOC_Os04g45140
Os.26579.1.S1_at--1046--6011Chr04:26473150..26473174 (25 bp)
GAGAGGCAGTTCATGGTGGACACCA
LOC_Os04g45140
Os.26579.1.S1_at--1059--9651Chr04:26473226..26473250 (25 bp)
TCAGCTCTGAAGAACTGGAGACGCT
LOC_Os04g45140
Os.26579.1.S1_at--394--4631Chr04:26473299..26473323 (25 bp)
GCGATGACAGGTTCACGTGACCAGT
LOC_Os04g45140
Os.26579.1.S1_at--799--991Chr04:26473338..26473362 (25 bp)
AGGATGGCAAACCTCTCTGGTGACA
LOC_Os04g45140
Os.26579.1.S1_at--694--3151Chr04:26473444..26473468 (25 bp)
AATTCGTCATTCATAGTCAAAAGGG
LOC_Os04g45140
Target Sequence 
GACCAGGTTCATCCAAGAGGATCTAACGATGGACCGTGTCTACGACTACATGTTTCACCTTCTGACAGAGTACGCTAAGC
TGCTCAAGTACAAGCCCACGGTGCCTGACAGAGCCGTCGAGGTCACCGTGGAGTCCATGACGCGCGGCCGGCGGGGACTG
GAGAGGCAGTTCATGGTGGACACCATGGTGGAAGCTGGTTCGGGCACCGGAGAGCCCTGCGAGCTGCCGCCGCCTTTCAG
CTCTGAAGAACTGGAGACGCTGAGGAGAAGACAGGCGGATGCGGTGAGACAGGTCGAGACGTGGGAGAAGCGATGACAGG
TTCACGTGACCAGTGACGAAATGTAATAAGGATGGCAAACCTCTCTGGTGACATCAATACATCACAGATTAATAGCCTCA
TAGGTTGGGTTTTGTTCGAATAGCAAAATACAGAATTTTGAAAGTAAATACTAAAATTCGTCATTCATAGTCAAAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis