Browse Element(s) Details


OsAffx.26672.1.S1_x_at

Description tigr:9632.m05853
TID=OsAffx.26672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4517011/11serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26672.1.S1_x_at--255--1231Chr04:26488376..26488400 (25 bp)
AGTTGCTGCACTGACATCAAGTTCA
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--591--6531Chr04:26488416..26488634 (25 bp)
GATTTCTCCCCAAAGATAATTGATT
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--804--1071Chr04:26488666..26488690 (25 bp)
AGGGCTCAGCTCTGGCAGCATAGTG
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--216--2211Chr04:26488704..26488728 (25 bp)
ACAACATCATAGACTCGCGGCACAG
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--793--5111Chr04:26488723..26488747 (25 bp)
GCACAGGCGTTTCATGGACATCCAG
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--401--2731Chr04:26488795..26488819 (25 bp)
AAGAGCCCCAGTTTCCAAAGATACA
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--516--1451Chr04:26488994..26489018 (25 bp)
AGAATTCATCAAGCTGGTCGACCCG
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--1023--7211Chr04:26489010..26489034 (25 bp)
GTCGACCCGAAGCTGATGAACGCCA
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--862--2631Chr04:26489034..26489058 (25 bp)
AACCATGAGAACCTGGGCATCGTCT
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--957--5151Chr04:26489059..26489083 (25 bp)
GCAACGTGGTGAACCTCTGCATCGA
LOC_Os04g45170
OsAffx.26672.1.S1_x_at--741--7211Chr04:26489105..26489129 (25 bp)
GTCGATGAACATGATCACCGCCATT
LOC_Os04g45170
Target Sequence 
AGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGATAATTGATTTTGAGAGATGGAGAG
CTCTCCTGACAAAACCAGGGCTCAGCTCTGGCAGCATAGTGAACGGGTCATTCAACAACATCATAGACTCGCGGCACAGG
CGTTTCATGGACATCCAGGCCAACACGTTTGCTTTCGGGGTGATTCTGCTGGAGCTGATAAGTGGAAGAGCCCCAGTTTC
CAAAGATACAGGAGATCTTGTGGACTGGGCAAGGAAGCACTTGGACCAGACCGAAGAATTCATCAAGCTGGTCGACCCGA
AGCTGATGAACGCCAACCATGAGAACCTGGGCATCGTCTGCAACGTGGTGAACCTCTGCATCGACGCCGAGCCGTGCCGG
AGACCGTCGATGAACATGATCACCGCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26672.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis