Browse Element(s) Details


OsAffx.4096.1.S1_at

Description tigr:9632.m04348
TID=OsAffx.4096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA
LOC_Os04g45270Os.10880.1.S1_at11/114+26527617..26529441Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4096.1.S1_at--579--10471Chr04:26506597..26506621 (25 bp)
TTAAATCGCTGGCTGCGGGACCGTT
LOC_Os04g45230
OsAffx.4096.1.S1_at--278--5831Chr04:26506579..26506603 (25 bp)
GACCGTTGCAGTGCCATGCGACCAT
LOC_Os04g45230
OsAffx.4096.1.S1_at--410--9131Chr04:26506563..26506587 (25 bp)
TGCGACCATCCCGTGGGCCGTTGGT
LOC_Os04g45230
OsAffx.4096.1.S1_at--88--6811Chr04:26506533..26506557 (25 bp)
GTTTTGGAGCTACGAGATCATCGCG
LOC_Os04g45230
OsAffx.4096.1.S1_at--925--8071Chr04:26506528..26506552 (25 bp)
GGAGCTACGAGATCATCGCGGTCAT
LOC_Os04g45230
OsAffx.4096.1.S1_at--1126--6031Chr04:26506520..26506544 (25 bp)
GAGATCATCGCGGTCATGCGTTTTC
LOC_Os04g45230
OsAffx.4096.1.S1_at--562--9611Chr04:26506507..26506531 (25 bp)
TCATGCGTTTTCACCCCGCAGGATG
LOC_Os04g45230
OsAffx.4096.1.S1_at--78--10351Chr04:26506500..26506524 (25 bp)
TTTTCACCCCGCAGGATGGGTTTAT
LOC_Os04g45230
OsAffx.4096.1.S1_at--1051--4211Chr04:26506492..26506516 (25 bp)
CCGCAGGATGGGTTTATTTATACAA
LOC_Os04g45230
OsAffx.4096.1.S1_at--210--171Chr04:26506477..26506501 (25 bp)
ATTTATACAAATCCTTCCCATGCAG
LOC_Os04g45230
OsAffx.4096.1.S1_at--974--3031Chr04:26506351..26506492 (25 bp)
AATCCTTCCCATGCAGGAGAGCAGG
LOC_Os04g45230
Target Sequence 
TTAAATCGCTGGCTGCGGGACCGTTGCAGTGCCATGCGACCATCCCGTGGGCCGTTGGTCCCGCGTTTTGGAGCTACGAG
ATCATCGCGGTCATGCGTTTTCACCCCGCAGGATGGGTTTATTTATACAAATCCTTCCCATGCAGGAGAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis