Browse Element(s) Details


Os.52243.1.S1_at

Description gb:AK065842.1
DB_XREF= gi:32975860
TID=Os.52243.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043D04, full insert sequence.
FL= gb:AK065842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4518011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52243.1.S1_at--617--7651Chr04:26492311..26492335 (25 bp)
GGGATCTTGAACGAATGGCCACAGT
LOC_Os04g45180
Os.52243.1.S1_at--1031--871Chr04:26492325..26492349 (25 bp)
ATGGCCACAGTGCATGATTTCATCT
LOC_Os04g45180
Os.52243.1.S1_at--229--9791Chr04:26493020..26493044 (25 bp)
TAACCTTGAGGATTTCCGCACCATT
LOC_Os04g45180
Os.52243.1.S1_at--220--5091Chr04:26493037..26493061 (25 bp)
GCACCATTGTATCCCGATGCAACAT
LOC_Os04g45180
Os.52243.1.S1_at--993--10311Chr04:26493136..26493160 (25 bp)
TTTCTTTTTGTGGACAGTGCCTTTT
LOC_Os04g45180
Os.52243.1.S1_at--222--2371Chr04:26493164..26493188 (25 bp)
AAAGCCTACTGCATGAGTGTTACAA
LOC_Os04g45180
Os.52243.1.S1_at--898--6211Chr04:26493189..26493213 (25 bp)
GAGGCGCTGATTGTGCATATGAAAT
LOC_Os04g45180
Os.52243.1.S1_at--123--3471Chr04:26493251..26493275 (25 bp)
CAGGCTTCAAGCTGACTAGGTTATT
LOC_Os04g45180
Os.52243.1.S1_at--999--1011Chr04:26493268..26493292 (25 bp)
AGGTTATTGCTGTTCTGCACTACTC
LOC_Os04g45180
Os.52243.1.S1_at--637--5111Chr04:26493284..26493308 (25 bp)
GCACTACTCTCCCATGTAAACTAAT
LOC_Os04g45180
Os.52243.1.S1_at--1113--1951Chr04:26493356..26493380 (25 bp)
ACTGACATGCAAGTTGTTCCATCGA
LOC_Os04g45180
Target Sequence 
GGGATCTTGAACGAATGGCCACAGTGCATGATTTCATCTGGACGGATTCTGAGATATCAAAGATGATCCATTGCTTTGAT
AGTGACAGGGATGGAAAGATTAACCTTGAGGATTTCCGCACCATTGTATCCCGATGCAACATGTTGCAGGAGCCTGAGAA
GTCAGGATGAGATAACGAGACACGATCGGTCGATCTTGTTCAAAGATTCAAGCTCTTTTCTTTTTGTGGACAGTGCCTTT
TTTCAAAGCCTACTGCATGAGTGTTACAAGAGGCGCTGATTGTGCATATGAAATGAGGCAATGAAACCCAGAACAGCATG
AGCATCAAGTTCAGGCTTCAAGCTGACTAGGTTATTGCTGTTCTGCACTACTCTCCCATGTAAACTAATGTCTGNAAAAC
TAACTATAGAATATGCGTTCGTCATGAAGTTGTAAGACTGACATGCAAGTTGTTCCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis