Browse Element(s) Details


OsAffx.26468.1.S1_at

Description tigr:9632.m04334
TID=OsAffx.26468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4508010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26468.1.S1_at--1011--991Chr04:26452269..26452477 (25 bp)
AGGTTGGTCCATCTGTGAAATTGCA
LOC_Os04g45080
OsAffx.26468.1.S1_at--766--6231Chr04:26452235..26452259 (25 bp)
GATGGAACTGGTGGCTTGCCGACAT
LOC_Os04g45080
OsAffx.26468.1.S1_at--356--4891Chr04:26452205..26452229 (25 bp)
GCTTTCTAGCTCGATATCTCGCAAG
LOC_Os04g45080
OsAffx.26468.1.S1_at--346--6511Chr04:26452193..26452217 (25 bp)
GATATCTCGCAAGGCCGCAATGCAT
LOC_Os04g45080
OsAffx.26468.1.S1_at--791--2451Chr04:26452166..26452190 (25 bp)
AACACGTCGTGGGACCCGCGATGAT
LOC_Os04g45080
OsAffx.26468.1.S1_at--399--2391Chr04:26452122..26452146 (25 bp)
AAACTGCCTTGCACAAGTTGCTTGG
LOC_Os04g45080
OsAffx.26468.1.S1_at--643--4931Chr04:26452103..26452127 (25 bp)
GCTTGGCTTGTCTGTTCAAGGGTTC
LOC_Os04g45080
OsAffx.26468.1.S1_at--920--1151NONE
AGTAGAGTATACGAGGATCCCCAGT
NONE
OsAffx.26468.1.S1_at--511--6171Chr04:26451019..26451043 (25 bp)
GAGGATCCCCAGTTGAACGCAGCTA
LOC_Os04g45080
OsAffx.26468.1.S1_at--540--6591Chr04:26450964..26450988 (25 bp)
GATTGGCCCGATCCAGCAGTTACCA
LOC_Os04g45080
OsAffx.26468.1.S1_at--765--4091Chr04:26450914..26450938 (25 bp)
CGAAAAGCACTTGCGCGGTACACTT
LOC_Os04g45080
Target Sequence 
AGGTTGGTCCATCTGTGAAATTGCAGATGAAATGGATGGAACTGGTGGCTTGCCGACATCCGTCGCTTTCTAGCTCGATA
TCTCGCAAGGCCGCAATGCATCCAACACGTCGTGGGACCCGCGATGATGTGGGTAGACGATTTTTAAAAACTGCCTTGCA
CAAGTTGCTTGGCTTGTCTGTTCAAGGGTTCAGTAGTAGAGTATACGAGGATCCCCAGTTGAACGCAGCTACCCCGGGGA
TTTGCACGCGGACCGACCGCGGATTGGCCCGATCCAGCAGTTACCACCCAAATCCCGTGCGTTCTCCCGTGCGAAAAGCA
CTTGCGCGGTACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis