Browse Element(s) Details


Os.16156.2.S1_at

Description gb:AK071636.1
DB_XREF= gi:32981659
TID=Os.16156.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100C24, full insert sequence.
FL= gb:AK071636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g450409/11ATP-dependent RNA helicase ste13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16156.2.S1_at--1114--391NONE
ATCAGCTCATCAGGTGTCATTTCAT
NONE
Os.16156.2.S1_at--1075--9971Chr04:26430716..26430740 (25 bp)
TAGCCGTGAAGCTCTTGATCAGACA
LOC_Os04g45040
Os.16156.2.S1_at--746--2991Chr04:26430747..26430771 (25 bp)
AATGTTGCTGATAAGGTCTGACCCC
LOC_Os04g45040
Os.16156.2.S1_at--21--4551Chr04:26430781..26430805 (25 bp)
GCCCTAATCTCTTATGACCTGTTGT
LOC_Os04g45040
Os.16156.2.S1_at--828--551Chr04:26430807..26430831 (25 bp)
ATCCGACATTGTATCAGCTAGCTTG
LOC_Os04g45040
Os.16156.2.S1_at--570--7851Chr04:26430854..26430878 (25 bp)
GGTACCTTCTTCTGTCTGTGTTGTG
LOC_Os04g45040
Os.16156.2.S1_at--572--4451Chr04:26430879..26430903 (25 bp)
GCCTCGCTGCACACGGATGGTTTAT
LOC_Os04g45040
Os.16156.2.S1_at--495--6251Chr04:26430894..26430918 (25 bp)
GATGGTTTATTCCACCTGAGCGATG
LOC_Os04g45040
Os.16156.2.S1_at--1084--6471Chr04:26430970..26430994 (25 bp)
GATACTTTCAGCATTTCACTTTCCA
LOC_Os04g45040
Os.16156.2.S1_at--991--10431Chr04:26431094..26431118 (25 bp)
TTATGTTCTCTTCTCACTGTTGGCT
LOC_Os04g45040
Os.16156.2.S1_at--297--1971Chr04:26431109..26431588 (25 bp)
ACTGTTGGCTTTTATGTCGCTTGCA
NONE
Target Sequence 
ATCAGCTCATCAGGTGTCATTTCATGATCTCACATGGTGTATNTTAATCAAAGTTGTGTAGGGGCACTCAGTAGCAAGTG
ACTTTGTAACAAGCTCATCTAAATGCTGTGGCTTAGCCGTGAAGCTCTTGATCAGACAATATTGAATGTTGCTGATAAGG
TCTGACCCCAGGTTGTTTGCCCTAATCTCTTATGACCTGTTGTCATCCGACATTGTATCAGCTAGCTTGTTTTACAGGAC
TTTTTAACCCTGGTACCTTCTTCTGTCTGTGTTGTGGCCTCGCTGCACACGGATGGTTTATTCCACCTGAGCGATGCTGT
CACCGTGTGTCGGTAGTGAATCAGCATCATGGTCTCAATGTTTCATGGATACTTTCAGCATTTCACTTTCCAGTATTTTG
TACTATTTTCATGCGTTTTGATTGAATGATCATTTTGTAATGTATTGTTTGACTGGGTTGGTGTACTAGGAGTATTTGTG
GATCGGAGATGTTATGTTCTCTTCTCACTGTTGGCTTTTATGTCGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16156.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis