Browse Element(s) Details


OsAffx.4094.1.S1_x_at

Description tigr:9632.m04324
TID=OsAffx.4094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4500011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g449501/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44990NANA4+26396871..26397275hypothetical protein
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4094.1.S1_x_at--866--8771Chr04:26399341..26399365 (25 bp)
TGTTAATGTCTCGTCCGCCTTAGGA
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--624--9411Chr04:26399351..26399374 (24 bp)
TCGTCCGCCTTAGGACTGCTAAGAT
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--204--5731Chr04:26399364..26399487 (25 bp)
GACTGCTAAGATTCCTCGGCAACGA
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--215--8431Chr04:26399551..26399575 (25 bp)
GGCCAGCTTCCTGAAAGACTTCGAG
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--216--4393Chr04:26399630..26399654 (25 bp)
GCCAAGGTGGCCATGAACGCGTACA
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--1022--8971Chr04:26399643..26399667 (25 bp)
TGAACGCGTACACGAGGATCTCGGC
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--751--6411Chr04:26399659..26399683 (25 bp)
GATCTCGGCGAGGAAGCACCCAGCG
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--919--2491Chr04:26399881..26399905 (25 bp)
AACATGGTGCTTGATCTTGGGCCAG
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--858--3611Chr04:26399896..26399920 (25 bp)
CTTGGGCCAGCGTTAGCGCAGTGAA
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--824--5311Chr04:26399918..26399942 (25 bp)
GAAGTTCGGGCCTGAAGCCCTGAAT
LOC_Os04g45000
OsAffx.4094.1.S1_x_at--816--4191Chr04:26399935..26399959 (25 bp)
CCCTGAATCCAGGTGTTGCTAAATT
LOC_Os04g45000
Target Sequence 
TGTTAATGTCTCGTCCGCCTTAGGACTGCTAAGATTCCTCGGCAACGAGGATCTGAGGAAGGAGCTGGACGACATTGACA
ACCTCACCGAGGAACGGCTGGACGAGGTGCTGGCCAGCTTCCTGAAAGACTTCGAGGCCGGCGAGCTGGAGGCGCACGGA
TGGCCGATGGGGTCGGCGGCGTACAAGGTGGCCAAGGTGGCCATGAACGCGTACACGAGGATCTCGGCGAGGAAGCACCC
AGCGCTGCGCATCAACTGCGCGCACCCAGGCTACGTCAAGACGGACCTGACCATCAACTCGGGGTTCCTGACGCCCGAGG
AGGGCGCGAGGAACGTCGTGACGGTGGCCCTGCTGCCGGACGGCGGGCCAACCGGCGCGTTCTTCGACGAGGGCAAGGAG
GCGTCGTTCGTGTGATGACGGCGAGGCCCAAGAAATTGAAGAACATGGTGCTTGATCTTGGGCCAGCGTTAGCGCAGTGA
AGTTCGGGCCTGAAGCCCTGAATCCAGGTGTTGCTAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4094.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis