Browse Element(s) Details


Os.20408.1.S1_at

Description gb:AK109281.1
DB_XREF= gi:32994490
TID=Os.20408.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B09, full insert sequence.
FL= gb:AK109281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4498011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44990NANA4+26396871..26397275hypothetical protein
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20408.1.S1_at--852--3831Chr04:26393202..26393226 (25 bp)
CTGCTGGGCATGTTCGTGAGAGACT
LOC_Os04g44980
Os.20408.1.S1_at--457--4211Chr04:26393145..26393169 (25 bp)
CCGACGGAGTTCTCGGCGTACAAGG
LOC_Os04g44980
Os.20408.1.S1_at--478--8971Chr04:26393057..26393081 (25 bp)
TGAACTGCGTGGACCCAGGGTACGT
LOC_Os04g44980
Os.20408.1.S1_at--90--9931Chr04:26393037..26393061 (25 bp)
TACGTGAAGACCGACCTGACCAGGA
LOC_Os04g44980
Os.20408.1.S1_at--895--3991Chr04:26392907..26392931 (25 bp)
CGTCCTTCGTGTGAGTGTGTGTGAC
LOC_Os04g44980
Os.20408.1.S1_at--884--7471Chr04:26392891..26392915 (25 bp)
GTGTGTGACGTGTACACGGTTCCGC
LOC_Os04g44980
Os.20408.1.S1_at--572--9471Chr04:26392847..26392871 (25 bp)
TCTGTATGCTCTCTGGACTCTGGAA
LOC_Os04g44980
Os.20408.1.S1_at--884--5711Chr04:26392832..26392856 (25 bp)
GACTCTGGAACCGTGTTTCCTGGTG
LOC_Os04g44980
Os.20408.1.S1_at--205--10671Chr04:26392816..26392840 (25 bp)
TTCCTGGTGGGCTGTGCGATGAACA
LOC_Os04g44980
Os.20408.1.S1_at--734--5491Chr04:26392743..26392767 (25 bp)
GAACACATGTGATCGCTAATTTGCT
LOC_Os04g44980
Os.20408.1.S1_at--472--171Chr04:26392686..26392710 (25 bp)
ATTTTCCTGTAGGATCATCGATCAA
LOC_Os04g44980
Target Sequence 
CTGCTGGGCATGTTCGTGAGAGACTTCGAGGCCGGCGCAGTGGCGGAGCGCGGGTGGCCGACGGAGTTCTCGGCGTACAA
GGTGGCCANNGCGGCGATGAGCGCGTACGCGAGGATCCTGGCCAGGAAGCGCCCCGCGCTGCGCGTGAACTGCGTGGACC
CAGGGTACGTGAAGACCGACCTGACCAGGAACTCGGGCCTCCTGACGCCCGAGGAAGGCGCGAGCAGGGTGGTGGCGGTG
GCGCTGCTGCCGGCCGGCGGACCGACGGGCGCGCTGTTCGACGGCGGCAAGGAGGCGTCCTTCGTGTGAGTGTGTGTGAC
GTGTACACGGTTCCGCTGCCGGTGGGCCCACCNACGTCTGTATGCTCTCTGGACTCTGGAACCGTGTTTCCTGGTGGGCT
GTGCGATGAACACTTTTTTTTTTTTGATCAAAGGGCAAACGCCCTCCATTTCCATTAGGATGAACACATGTGATCGCTAA
TTTGCTGTTTTTATTATCACTTGTATGGAGTACCTATTATTTTCCTGTAGGATCATCGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis