Browse Element(s) Details


Os.52919.1.S1_at

Description gb:AK069907.1
DB_XREF= gi:32979931
TID=Os.52919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full insert sequence.
FL= gb:AK069907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4501011/11LIM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44990NANA4+26396871..26397275hypothetical protein
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52919.1.S1_at--127--1051Chr04:26402438..26402462 (25 bp)
AGGTGAGTCATACCACAAGAGCTGC
LOC_Os04g45010
Os.52919.1.S1_at--596--5571Chr04:26402312..26402336 (25 bp)
GAAAGGGAGCTACAATCACATGAAG
LOC_Os04g45010
Os.52919.1.S1_at--812--2851Chr04:26402256..26402280 (25 bp)
AAGTGGTGCCCGAAGAGCAACCGGC
LOC_Os04g45010
Os.52919.1.S1_at--1032--6171Chr04:26402206..26402230 (25 bp)
GAGGACAACTAGGACTACGAAACGA
LOC_Os04g45010
Os.52919.1.S1_at--113--1851Chr04:26402190..26402214 (25 bp)
ACGAAACGAGCCAAACACATACGGT
LOC_Os04g45010
Os.52919.1.S1_at--1084--3971Chr04:26402169..26402193 (25 bp)
CGGTGATACACGGATCTCTGGAGTT
LOC_Os04g45010
Os.52919.1.S1_at--651--9511Chr04:26402155..26402179 (25 bp)
TCTCTGGAGTTTCTGTTTACTAATT
LOC_Os04g45010
Os.52919.1.S1_at--1011--2211Chr04:26402006..26402030 (25 bp)
ACAATGGCATGCGACTGACTGCCAG
LOC_Os04g45010
Os.52919.1.S1_at--19--8951Chr04:26401991..26402015 (25 bp)
TGACTGCCAGCCTCCTGTGAAAAAT
LOC_Os04g45010
Os.52919.1.S1_at--706--3871Chr04:26401966..26401990 (25 bp)
CTGTAATTTCTGTAACTACTACGAA
LOC_Os04g45010
Os.52919.1.S1_at--184--8851Chr04:26401940..26401964 (25 bp)
TGATCATACTTCCTAGCAACCTTAT
LOC_Os04g45010
Target Sequence 
AGGTGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCTGACCACCTCCTCCTACGCGGCGCTCA
ACGGGGTGTTGTACTGCAAGATACACTTCGGGCAGCTGTTCATGGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGC
GAGTCCCAGGAGGTGTTGCCGGAAGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGAGGACAA
CTAGGACTACGAAACGAGCCAAACACATACGGTGATACACGGATCTCTGGAGTTTCTGTTTACTAATTTTGCAACGGTTG
TTTATTCCCTCCTCTTTTTTTGCTCGTGATCCTCCCTGTGTGCGAGTAGTCTGTCAAGCTGTAAGTGTACGCCTTCGTTT
CATAGGAGGCTCATGAAAATGGCAGGTTGACAACAATGGCATGCGACTGACTGCCAGCCTCCTGTGAAAAATCTGTAATT
TCTGTAACTACTACGAATTGATCATACTTCCTAGCAACCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis