Browse Element(s) Details


Os.9494.1.S1_s_at

Description gb:CF292249
DB_XREF= gi:33661282
DB_XREF=30DGS--01-A05.g1
CLONE=30DGS--01-A05
TID=Os.9494.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9494 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47914 (A.thaliana) T47914 hypothetical protein T20K12.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4500011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44990NANA4+26396871..26397275hypothetical protein
LOC_Os04g45000Os.9494.1.S1_s_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_x_at11/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45000OsAffx.4094.1.S1_at10/114+26398387..26400024oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g45010Os.52919.1.S1_at11/114+26401934..26403500LIM domain containing protein, expressed
LOC_Os04g45020Os.54935.2.S1_at11/114+26419037..26421579Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g45030OsAffx.14269.1.S1_at11/114+26423089..26424555hypothetical protein
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9494.1.S1_s_at--997--1931Chr04:26399857..26399881 (25 bp)
ACGGCGAGGCCCAAGAAATTGAAGA
LOC_Os04g45000
Os.9494.1.S1_s_at--146--3511Chr04:26399883..26399907 (25 bp)
CATGGTGCTTGATCTTGGGCCAGCG
LOC_Os04g45000
Os.9494.1.S1_s_at--290--7771Chr04:26399886..26399910 (25 bp)
GGTGCTTGATCTTGGGCCAGCGTTA
LOC_Os04g45000
Os.9494.1.S1_s_at--978--10771Chr04:26399891..26399915 (25 bp)
TTGATCTTGGGCCAGCGTTAGCGCA
LOC_Os04g45000
Os.9494.1.S1_s_at--857--3611Chr04:26399896..26399920 (25 bp)
CTTGGGCCAGCGTTAGCGCAGTGAA
LOC_Os04g45000
Os.9494.1.S1_s_at--750--4031Chr04:26399906..26399930 (25 bp)
CGTTAGCGCAGTGAAGTTCGGGCCT
LOC_Os04g45000
Os.9494.1.S1_s_at--75--9991Chr04:26399909..26399933 (25 bp)
TAGCGCAGTGAAGTTCGGGCCTGAA
LOC_Os04g45000
Os.9494.1.S1_s_at--882--4271Chr04:26399928..26399952 (25 bp)
CCTGAAGCCCTGAATCCAGGTGTTG
LOC_Os04g45000
Os.9494.1.S1_s_at--817--4191Chr04:26399935..26399959 (25 bp)
CCCTGAATCCAGGTGTTGCTAAATT
LOC_Os04g45000
Os.9494.1.S1_s_at--395--3851Chr04:26399937..26399961 (25 bp)
CTGAATCCAGGTGTTGCTAAATTAT
LOC_Os04g45000
Os.9494.1.S1_s_at--487--3611Chr04:26399965..26399989 (25 bp)
CTTGTTCATTCTGGGAATAAGTCTA
LOC_Os04g45000
Target Sequence 
ACGGCGAGGCCCAAGAAATTGAAGAACATGGTGCTTGATCTTGGGCCAGCGTTAGCGCAGTGAAGTTCGGGCCTGAAGCC
CTGAATCCAGGTGTTGCTAAATTATGAACTTGTTCATTCTGGGAATAAGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9494.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis