Browse Element(s) Details


Os.16996.1.S1_at

Description gb:AK073280.1
DB_XREF= gi:32983303
TID=Os.16996.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025F17, full insert sequence.
FL= gb:AK073280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1310010/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16996.1.S1_at--621--5551Chr01:7290518..7290542 (25 bp)
GAAACGACTCATTCGATGCTCGGAA
LOC_Os01g13100
Os.16996.1.S1_at--599--4071Chr01:7290591..7290615 (25 bp)
CGAGATCCATCTTTCGCAGCGATTC
LOC_Os01g13100
Os.16996.1.S1_at--377--1731Chr01:7290731..7290755 (25 bp)
ACCAGTATCATCATCCCATTAGGAC
LOC_Os01g13100
Os.16996.1.S1_at--1021--2051Chr01:7290757..7290781 (25 bp)
ACTTCGCGGGTTACTGTTGCTGAAC
LOC_Os01g13100
Os.16996.1.S1_at--443--4431Chr01:7290791..7290815 (25 bp)
GCCATGTGTTGTGCTTGTTTTGTTC
LOC_Os01g13100
Os.16996.1.S1_at--533--4991Chr01:7290825..7290849 (25 bp)
GCATGCTCAGTCTACTCGGTTGATA
LOC_Os01g13100
Os.16996.1.S1_at--35--3791Chr01:7290839..7290863 (25 bp)
CTCGGTTGATATAGGCCTTTCTTTT
LOC_Os01g13100
Os.16996.1.S1_at--875--8811Chr01:7290948..7290972 (25 bp)
TGATGTAAGTTTCTGGTCTGGCCCG
LOC_Os01g13100
Os.16996.1.S1_at--325--7031Chr01:7290974..7290998 (25 bp)
GTACAATCACGCCTGCAATTTTCTC
LOC_Os01g13100
Os.16996.1.S1_at--619--3131Chr01:7290990..7291014 (25 bp)
AATTTTCTCTGTCGTTGCCCTGAGT
LOC_Os01g13100
Os.16996.1.S1_at--536--6831NONE
GTTTCAACTCTACCCATATCTTATT
NONE
Target Sequence 
GAAACGACTCATTCGATGCTCGGAATATTTTCAGAAAATATGGGGAACATGACTGGGGCGAATACCTCATTCCCGAGATC
CATCTTTCGCAGCGATTCAAGTTCGATGAAAGAGGGTACTACTACTGCTGCTCTTCAATCCCCTTGCCTGCGGCGGAGAT
GCAAACGGAGTGAGTTTCATAATAAACACATTTTCAGTGTTTTCAAATCTTTCACCAGTATCATCATCCCATTAGGACGA
CTTCGCGGGTTACTGTTGCTGAACCAATAATGTGCCATGTGTTGTGCTTGTTTTGTTCTGGAGTGTGGCATGCTCAGTCT
ACTCGGTTGATATAGGCCTTTCTTTTGATAGTGGGATAGCCGGATAGGCAATTATGCATCATGCTGTGGACCTATGGTGT
TGTCAATGGCAGTGGGCTCCNTGGAGTGGTTGATGTAAGTTTCTGGTCTGGCCCGTGTACAATCACGCCTGCAATTTTCT
CTGTCGTTGCCCTGAGTTTCAACTCTACCCATATCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis