Browse Element(s) Details


Os.46916.1.S1_s_at

Description gb:AK107453.1
DB_XREF= gi:32992662
TID=Os.46916.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C07, full insert sequence.
FL= gb:AK107453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1308011/1160S acidic ribosomal protein P3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46916.1.S1_s_at--1077--1111Chr01:7275834..7275858 (25 bp)
AGTGAAGACGACCTTGGATTCTCCC
LOC_Os01g13080
Os.46916.1.S1_s_at--349--8571Chr01:7275820..7275844 (25 bp)
TGGATTCTCCCTCTTTGATTAGATT
LOC_Os01g13080
Os.46916.1.S1_s_at--54--10051Chr01:7275801..7275825 (25 bp)
TAGATTTTGCTTTCATATATCCAGC
LOC_Os01g13080
Os.46916.1.S1_s_at--1133--4871Chr01:7275793..7275817 (25 bp)
GCTTTCATATATCCAGCAAATTTGT
LOC_Os01g13080
Os.46916.1.S1_s_at--840--2251Chr01:7275776..7275800 (25 bp)
AAATTTGTCATGGTCCTCTTGCAGT
LOC_Os01g13080
Os.46916.1.S1_s_at--1025--7251Chr01:7275764..7275788 (25 bp)
GTCCTCTTGCAGTAGTTTTGGTGTT
LOC_Os01g13080
Os.46916.1.S1_s_at--96--6811Chr01:7275717..7275741 (25 bp)
GTTTTGGTGTTTGATGCTCATGCTC
LOC_Os01g13080
Os.46916.1.S1_s_at--1065--6331Chr01:7275705..7275729 (25 bp)
GATGCTCATGCTCTTGCAGTAGTTT
LOC_Os01g13080
Os.46916.1.S1_s_at--456--3451Chr01:7275689..7275713 (25 bp)
CAGTAGTTTTGGTGTTTGATGCTCA
LOC_Os01g13080
Os.46916.1.S1_s_at--116--6351Chr01:7275672..7275696 (25 bp)
GATGCTCATGAACCAGAAGGCCTTG
LOC_Os01g13080
Os.46916.1.S1_s_at--780--5291Chr01:7275657..7275681 (25 bp)
GAAGGCCTTGTGAACCTGCTAAGTA
LOC_Os01g13080
Target Sequence 
AGTGAAGACGACCTTGGATTCTCCCTCTTTGATTAGATTTTGCTTTCATATATCCAGCAAATTTGTCATGGTCCTCTTGC
AGTAGTTTTGGTGTTTGATGCTCATGCTCTTGCAGTAGTTTTGGTGTTTGATGCTCATGCTCTTGCAGTAGTTTTGGTGT
TTGATGCTCATGAACCAGAAGGCCTTGTGAACCTGCTAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46916.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis