Browse Element(s) Details


Os.10055.2.S1_at

Description gb:AK111599.1
DB_XREF= gi:37988262
TID=Os.10055.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098O18, full insert sequence.
FL= gb:AK111599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1306010/11Casein kinase I homolog hhp1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0004712molecular_functionprotein threonine/tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10055.2.S1_at--977--7131Chr01:7268410..7268434 (25 bp)
GTCATTGGAGCTGGTACGGCCTCTT
LOC_Os01g13060
Os.10055.2.S1_at--653--1611Chr01:7268418..7268442 (25 bp)
AGCTGGTACGGCCTCTTATCAATTT
LOC_Os01g13060
Os.10055.2.S1_at--686--7771Chr01:7268422..7268446 (25 bp)
GGTACGGCCTCTTATCAATTTAGTT
LOC_Os01g13060
Os.10055.2.S1_at--29--3931Chr01:7268426..7268450 (25 bp)
CGGCCTCTTATCAATTTAGTTCTTG
LOC_Os01g13060
Os.10055.2.S1_at--491--7051Chr01:7268453..7268477 (25 bp)
GTGTAAGTTACAGATATTTTCCATC
LOC_Os01g13060
Os.10055.2.S1_at--770--10391Chr01:7268469..7268493 (25 bp)
TTTTCCATCTGGTGAAGCATCTACA
LOC_Os01g13060
Os.10055.2.S1_at--595--7771Chr01:7268479..7268503 (25 bp)
GGTGAAGCATCTACATTATGTCTAT
LOC_Os01g13060
Os.10055.2.S1_at--661--451Chr01:7268487..7268511 (25 bp)
ATCTACATTATGTCTATCTCATGAA
LOC_Os01g13060
Os.10055.2.S1_at--92--2411Chr01:7268525..7268549 (25 bp)
AAAAAAGATCTATTCATATGGTTGA
LOC_Os01g13060
Os.10055.2.S1_at--687--7891NONE
GGTTCTCAGGAAAGTTATGTATTTT
NONE
Os.10055.2.S1_at--415--8771Chr01:7268575..7268599 (25 bp)
TGTATTTTGTTTTCATCATGCTAGC
LOC_Os01g13060
Target Sequence 
GTCATTGGAGCTGGTACGGCCTCTTATCAATTTAGTTCTTGAAGTGTAAGTTACAGATATTTTCCATCTGGTGAAGCATC
TACATTATGTCTATCTCATGAAATTATATTATACCAAAAAAGATCTATTCATATGGTTGAAAGATTANGGTTCTCAGGAA
AGTTATGTATTTTGTTTTCATCATGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10055.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis