Browse Element(s) Details


Os.46916.1.S1_at

Description gb:AK107453.1
DB_XREF= gi:32992662
TID=Os.46916.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C07, full insert sequence.
FL= gb:AK107453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g130805/1160S acidic ribosomal protein P3, putative, expressed
LOC_Os10g101901/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46916.1.S1_at--829--7111NONE
GTCATGAATGTTGGCCATATCTGTG
NONE
Os.46916.1.S1_at--563--5271NONE
GAATGTTGGCCATATCTGTGTGACT
NONE
Os.46916.1.S1_at--396--734Chr07:11734888..11735017 (24 bp)
ATGTTGGCCATATCTGTGTGACTTG
NONE
Os.46916.1.S1_at--706--6612Chr09:743109..743239 (24 bp)
GTTGGCCATATCTGTGTGACTTGCA
NONE
Os.46916.1.S1_at--1111--4431NONE
GCCATATCTGTGTGACTTGCAGTTT
NONE
Os.46916.1.S1_at--323--491Chr01:7275597..7275621 (25 bp)
ATCTGTGTGACTTGCAGTTTATGTT
LOC_Os01g13080
Os.46916.1.S1_at--42--5031Chr01:7275584..7275608 (25 bp)
GCAGTTTATGTTGAGATTTTGGTTA
LOC_Os01g13080
Os.46916.1.S1_at--66--6052Chr10:5365773..5366163 (25 bp)
GAGATTTTGGTTATATGTGACATTT
LOC_Os10g10190
Os.46916.1.S1_at--476--271Chr01:7275560..7275584 (25 bp)
ATATGTGACATTTAGCATCAACGTA
LOC_Os01g13080
Os.46916.1.S1_at--877--5671Chr01:7275554..7275578 (25 bp)
GACATTTAGCATCAACGTAAGTAAT
LOC_Os01g13080
Os.46916.1.S1_at--101--4971Chr01:7275546..7275570 (25 bp)
GCATCAACGTAAGTAATCAGAGTCA
NONE
Target Sequence 
GTCATGAATGTTGGCCATATCTGTGTGACTTGCAGTTTATGTTGAGATTTTGGTTATATGTGACATTTAGCATCAACGTA
AGTAATCAGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis