Browse Element(s) Details


OsAffx.9883.1.S1_x_at

Description gb:NM_188624.1
DB_XREF= gi:34904331
TID=OsAffx.9883.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1312011/11MIP family channel proteins containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0018987biological_processosmoregulation
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9883.1.S1_x_at--400--5291Chr01:7295290..7295314 (25 bp)
GAATGGGCCGACCACTGGATCTATT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--157--1951Chr01:7295303..7295327 (25 bp)
ACTGGATCTATTGGGTTGGGCCTCT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--825--10831Chr01:7295318..7295342 (25 bp)
TTGGGCCTCTTATAGGTGGGCCTTT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--959--3891Chr01:7295345..7295369 (25 bp)
CTGGGCTGGTTTATGAGGGCCTCTT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--562--6811Chr01:7295353..7295377 (25 bp)
GTTTATGAGGGCCTCTTCATGGGCC
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--573--4431Chr01:7295384..7295408 (25 bp)
GCCATGAGCCGCTTCCTAGGAATGA
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--1055--4891Chr01:7295394..7295418 (25 bp)
GCTTCCTAGGAATGACGGCGACTTC
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--162--4371Chr01:7295411..7295435 (25 bp)
GCGACTTCTAAGTTAATTAGGCCTT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--297--351Chr01:7295440..7295464 (25 bp)
ATAACTTTGATCTCGAGCTAGTAAA
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--121--1471Chr01:7295480..7295504 (25 bp)
AGAAGTGATTGGTTTTTAGGTGCAT
LOC_Os01g13120
OsAffx.9883.1.S1_x_at--1134--1031Chr01:7295497..7295521 (25 bp)
AGGTGCATGTAATTTCTACTCGTTT
LOC_Os01g13120
Target Sequence 
GAATGGGCCGACCACTGGATCTATTGGGTTGGGCCTCTTATAGGTGGGCCTTTGGCTGGGCTGGTTTATGAGGGCCTCTT
CATGGGCCCGCCCGGCCATGAGCCGCTTCCTAGGAATGACGGCGACTTCTAAGTTAATTAGGCCTTAATAATAACTTTGA
TCTCGAGCTAGTAAAAATAATGAATGTATGAGAAGTGATTGGTTTTTAGGTGCATGTAATTTCTACTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9883.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis