Browse Element(s) Details


Os.27302.1.S1_x_at

Description gb:NM_188632.1
DB_XREF= gi:34904347
TID=Os.27302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1315011/11metallo-beta-lactamase superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27302.1.S1_x_at--925--5471Chr01:7327862..7327886 (25 bp)
GAACTACAGCCGGAAGCCTGCAAGT
LOC_Os01g13150
Os.27302.1.S1_x_at--280--2831Chr01:7327945..7327969 (25 bp)
AAGTTCTTTACAGTGTCCCAGTTCT
LOC_Os01g13150
Os.27302.1.S1_x_at--882--891Chr01:7328073..7328097 (25 bp)
AGGCCCTGCCCAGCTCTTGTAGATG
LOC_Os01g13150
Os.27302.1.S1_x_at--483--1291Chr01:7328093..7328117 (25 bp)
AGATGCGTCCAGAGATGCCACTGTA
LOC_Os01g13150
Os.27302.1.S1_x_at--561--6211Chr01:7328546..7328570 (25 bp)
GAGGCGATCGCTAGGAACCATAGTA
LOC_Os01g13150
Os.27302.1.S1_x_at--639--5031Chr01:7328588..7328612 (25 bp)
GCAGTAGGCACATCAGCCGGAGCAT
LOC_Os01g13150
Os.27302.1.S1_x_at--922--6871Chr01:7328616..7328640 (25 bp)
GTATAATCTTGACCCACTTTAGCCA
LOC_Os01g13150
Os.27302.1.S1_x_at--18--2771Chr01:7328684..7328708 (25 bp)
AAGACTTGCATTGCGTTCGACCTGA
LOC_Os01g13150
Os.27302.1.S1_x_at--41--8891Chr01:7328709..7328733 (25 bp)
TGAGTGTGAATCTGGCGGACTTGCC
LOC_Os01g13150
Os.27302.1.S1_x_at--105--8131Chr01:7328725..7328749 (25 bp)
GGACTTGCCAGTACTGCCAAAGGTT
LOC_Os01g13150
Os.27302.1.S1_x_at--928--9251Chr01:7328752..7328776 (25 bp)
TCCTCACCTGAAGCTCTTGTTCAAA
LOC_Os01g13150
Target Sequence 
GAACTACAGCCGGAAGCCTGCAAGTCCAAGAGATACTACAGCTCTAACTAATTTGAAAGATGTCCTACATGAATCAGGTT
TGGAAGTTCTTTACAGTGTCCCAGTTCTGCACTGTCCACAGGCGTTTGGAGTTGTTCTGAGAGCCAAGGAGAAGGTGAGC
AGTGCTGGAAAAGCTATTCCAGGATGGAAGGTTGTTTATTCAGGTGACACGAGGCCCTGCCCAGCTCTTGTAGATGCGTC
CAGAGATGCCACTGTACTAATACATGAGGCAACATTTGAGGACAGTATGAAGGATGAGGCGATCGCTAGGAACCATAGTA
CAACAAAGGAGGCCATAGCAGTAGGCACATCAGCCGGAGCATACCGTATAATCTTGACCCACTTTAGCCAAAGATACCCT
AAAATCCCAGTTTTTGATGAGGTTGATATGCAAAAGACTTGCATTGCGTTCGACCTGATGAGTGTGAATCTGGCGGACTT
GCCAGTACTGCCAAAGGTTCTTCCTCACCTGAAGCTCTTGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27302.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis